OpenECCI [open-e-ki] is a Python library for Electron Channelling Contrast Imaging (ECCI) analysis of crystal defects in Scanning Electron Microscope (SEM) by guiding precise stereo-tilt of the specimen to the preferable orientations.
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| Documentation | Work in progress |
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Refer to the included Jupyter notebook tutorials for detailed instruction and applications. Demo datasets can be downloaded from openECCI-data repository. The openECCI documentation page is currently under development. Stay tuned for more information. More code examples, and a detailed workflow tutorial paper will be updated soon.
Create a new conda environment
conda update conda
conda create -n openecci python=3.10
conda activate openecci
Install openECCI with pip:
pip install openECCIor you can install from source:
git clone https://github.com/IMBalENce/openECCI
cd openECCI
pip install .
If you want to create an editable install:
pip install -e .
If you are using openECCI in your scientific research, please help our scientific visibility by citing the Zenodo DOI: https://doi.org/10.5281/zenodo.11183730.
| Zhou Xu | Monash Centre for Electron Microscopy (MCEM) |
| Håkon Wiik Ånes | Norwegian University of Science and Technology Xnovo Technology Aps |
| Sergey Gorelick | Monash Centre for Electron Microscopy (MCEM) Ramaciotti Centre for Cryo-Electron Microscopy |
| Xiya Fang | Monash Centre for Electron Microscopy (MCEM) |
| Peter Miller | Monash Centre for Electron Microscopy (MCEM) |