ISA tools

International Collaboration (leads based at: University of Oxford, UK)

Pinned Repositories

BioInvIndex
The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).
Language:Java16 4 5313
biopy-isatab
Python parser for ISAtab, a biological file format for experimental metadata
Language:Python16 4 63
isa-api
ISA tools API
Language:Jupyter Notebook42 9 39638
ISAconfigurator
The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).
Language:Java13 4 4512
ISAcreator
ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
Language:Java40 8 30026
linkedISA
Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).
Language:Java12 7 125
OntoMaton
OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.
Language:JavaScript41 10 349
Risa
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).
Language:R20 7 149
SequenceLogoVis
A better sequence logo visualization
Language:JavaScript22 7 61
stato
This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:
Language:Java31 10 728

ISA tools's Repositories

ISA-tools/isa-api
ISA tools API
Language:Jupyter Notebook42 9 39638
ISA-tools/OntoMaton
OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.
Language:JavaScript41 10 349
ISA-tools/ISAcreator
ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
Language:Java40 8 30026
ISA-tools/stato
This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:
Language:Java31 10 728
ISA-tools/BioInvIndex
The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).
Language:Java16 4 5313
ISA-tools/ISAconfigurator
The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).
Language:Java13 4 4512
ISA-tools/ISAvalidator-ISAconverter-BIImanager
The ISAvalidator, ISA converter and BII data manager tools
Language:Java12 5 5415
ISA-tools/mzml2isa
Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
Language:Python12 7 306
ISA-tools/ISAdatasets
Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)
7 6 511
ISA-tools/graph2tab
graph2tab, a library to convert experimental workflow graphs into tabular formats
Language:Java6 3 02
ISA-tools/jUtils
jUtils, a miscellanea of small and handy general purpose utilities for Java
Language:Java6 4 06
ISA-tools/mzml2isa-galaxy
mzml2isa for galaxy
6 10 35
ISA-tools/isa-configurations
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
5 3 89
ISA-tools/isa-specs
ISA Model and Serialization Specifications
Language:HTML5 5 86
ISA-tools/isatools-notebooks
Example Jupyter notebooks using the ISA-API
Language:Jupyter Notebook5 5 42
ISA-tools/MSIO
Metabolomics Standards Initiative Ontology
Language:Java5 6 122
ISA-tools/isa-rest-service
RESTful web service to use ISA API
Language:Python2 8 251
ISA-tools/BioSharingUtils
A selection of tools to automatically update content in BioSharing.
Language:Java1 3 1
ISA-tools/isa-cookbook
ISA python API documentation
Language:JavaScript1 2 01
ISA-tools/isa-rwval
Read/write/validation packages for the ISA tools API
Language:Python1 5 95
ISA-tools/psql2graphql
A PSQL to GRAPHQL python API using flask
Language:Python0 3 01
ISA-tools/isa-contexts
Language:Python1 1
ISA-tools/isa-create-test-notebooks
A set of notebooks to create StudyDesigns
Language:Jupyter Notebook5 01
ISA-tools/ISA-tools.github.io
ISA tools website
Language:HTML5 5
ISA-tools/ISAcommons.github.io
ISA commons website
Language:JavaScript1 0
ISA-tools/isaLD
A netlify endpoint to inject ISA LD into ISA JSON
Language:JavaScript2 0
ISA-tools/nmrml2isa
Generate ISA-Tab studies from .nmrML files
Language:Python9 2
ISA-tools/ptox-metadata-manager-client
Language:Vue
ISA-tools/stato-app
The web application for the STATO ontology
Language:Java5 0
ISA-tools/stato-dashboard
a obofoundry template based dashboard
Language:Shell2 0