Closed-loop modeling of intrinsic cardiac nervous system contributions to respiratory sinus arrhythmia

Source code of the cardiovascular-dbi service on o²S²PARC for the Cardiovascular Control model developed at the Daniel Baugh Institute, see original repository here

Citing the original model

If you find this repository useful for your academic work, please consider citing the associated publication:

Gee, M. M., Lenhoff, A. M., Schwaber, J. S., Ogunnaike, B. A., & Vadigepalli, R. (2023). Closed‐loop modeling of central and intrinsic cardiac nervous system circuits underlying cardiovascular control. AIChE Journal, 69(4), e18033. https://doi.org/10.1002/aic.18033

Information for developers of the o²S²PARC Service

This Service was built starting from the cookiecutter-osparc-service.

Usage

$ make help
$ make build
$ make publish-local

Note: the code (.sh file) and executable in src/cardio_control/ has been generated using MATLAB Compiler, v2020b. This requires a valid MATLAB license.

To compile the executable that can be run with Matlab Runtime as a standalone application:

{your_path_to_matlab}/bin/mcc -mv your_matlab_script.m

How to test

After building the image, a Docker container can be start with:

docker run -it --rm -v ${PWD}/validation/input:/input -v ${PWD}/validation/output:/output docker.io/simcore/services/comp/cardiovascularcontrol-dbi:service_version_here

Once a new container has started, type run in the console. You should see the model running and outputs appearing in validation/output

Have an issue or question?

Please open an issue in this repository.