IdoBar
I'm a bioinformatician/molecular biologist, focusing on genomic improvement of non-model agriculture (and aquaculture) commercially important species
Griffith UniversityBrisbane, QLD, Australia
Pinned Repositories
6003ESC_workshops_binder
Scientific Data Analysis Workshops (Binder-ready)
Assign_IF
Search indexed scientific journals and find their impact factor
Crop_Production
Crop production data for Australian Chickpea and tropical fruits (Papaya, Strawberry, Pineapple and Mango)
Mazospega
MAke ZOtero SPEcies Great Again
nf-blast
A nextflow implementation of taxonomy-enabled NCBI Blast and Diamond homology searches
par-spanner
A shell wrapper to split an input large FASTA file and then execute NCBI BLAST or HMMscan in parallel
Pathogen_diagnostics_analysis
Pathogen Diagnostics using Nanopore MinIon
IdoBar's Repositories
IdoBar/Crop_Production
Crop production data for Australian Chickpea and tropical fruits (Papaya, Strawberry, Pineapple and Mango)
IdoBar/3030NSC_Workshop6_DGE
Applied Bioinformatics (3030NSC) Workshop6 - Differential Gene Expression Analysis
IdoBar/A_rabiei_WGS_analysis
Whole-Genome-Sequencing analysis pipeline of Ascochyta rabiei isolates
IdoBar/CNVpytor_binder
Binder repo to analyse CNVpytor results
IdoBar/nf-blast
A nextflow implementation of taxonomy-enabled NCBI Blast and Diamond homology searches
IdoBar/Peel_get_NCBI_records
Improved retrieval of records from NCBI using rentrez
IdoBar/transrate
Understand your transcriptome assembly
IdoBar/6003ESC_workshops_binder
Scientific Data Analysis Workshops (Binder-ready)
IdoBar/Assign_IF
Search indexed scientific journals and find their impact factor
IdoBar/3030NSC-workshops-binder
IdoBar/ABW2022
Ascochyta Blight Workshop 2022 website
IdoBar/agri-genomics
IdoBar/blast-nf
NextFlow implementation of BLAST program
IdoBar/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
IdoBar/ibar
A personal academic website for Dr. Ido Bar
IdoBar/idobar.github.io
Aacademic personal website, forked from mmistakes/minimal-mistakes
IdoBar/interproscan_docker
Docker recipe for building Interproscan
IdoBar/lab_members
Geographical mapping of group members
IdoBar/ochRe
Australia-themed Colour Palettes
IdoBar/poseidon
PoSeiDon: positive selection detection and recombination analysis pipeline
IdoBar/predector
Effector prediction pipeline based on protein properties.
IdoBar/QX_bioinfo_analysis
Transcriptome analysis pipeline of QX-infected oyster tissues
IdoBar/RapClust
Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
IdoBar/ResBazBris2019
A presentation for the ECR panel at ResBazBris 2019
IdoBar/Rmarkdown_training
A training session on creating rmarkdown files to document bioinformatics analyses
IdoBar/ropenblas
Package to link R language to OpenBLAS library
IdoBar/Sensory_Genetics_training_binder
Sensory_Genetics_training_binder
IdoBar/shell-novice
The Unix Shell
IdoBar/TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
IdoBar/workflows-nextflow
Workflow management with Nextflow and nf-core