Illumina/interop

interop_summary command issue

Closed this issue · 3 comments

mcnairr2 commented

Having issue creating an interop summary file for a NextSeq run where the control software is v1.5 and the DRAGEN software is v3.10.

(base) -bash-4.2$ cd /data/SBI_Illumina_GA2_runs/NextSeq/230117_VL00138_100_AACHVV5M5/
(base) -bash-4.2$ interop_summary --csv=1 . > 230117NextSeq-interop_summary.csv
No format found to parse ErrorMetricsOut.bin with version: 6 of 3
/opt/conda/conda-bld/illumina-interop_1618932334259/work/./interop/io/metric_stream.h::read_metrics (109)

ezralanglois commented

It looks like the latest version of InterOp should work.

  1. What version are you using?
  2. Assuming it is not 1.2.0, have you tried to upgrade to 1.2.0?
mcnairr2 commented

It looks like we are using v1.1.23. We have not tried to upgrade to v1.2.0, is it as simple as going in Linux and running the conda install? Would I need root access to run the install?

ezralanglois commented

I am not sure how you originally installed it. If it is available on conda, then someone else is packaging it there.

I cannot comment on whether you would need root either. That is a local system issue.