Can I get all the index information

Question

Can I get all the index information

Closed this issue 3 months ago · 3 comments

Nitin123-4 commented 3 months ago

Hi All,

Can I get all the index and reads generated information from InterOP folder?

Provided I don't have sample sheet there. I just want to know without sample sheet top 1000 indexes.

The idea is can we get the top 1000 index with reads information without running bcl2fastq or bcl-convert?

Answer 1 · 2024-04-03T19:44:01.000Z

That information is not written to a binary interop file. It is available in the reports of both programs, depending how they are configured

Answer 2 · 2024-04-03T19:58:57.000Z

Thanks for the quick response. It will be helpful if somehow we can get this information without running bcl2fastq or bcl-convert as it takes time to parse bcl files.

Thanks.

Answer 3 · 2024-04-03T20:37:00.000Z

Those metrics are all produced by bclconvert/bcl2fastq (not RTA). So you have to run those tools to get the metrics