To install and run this container on tacc.
Run the following to pull the structure
git clone https://github.com/In-For-Disaster-Analytics/r-gdal-container.gitThen Load the Apptainer software, and RStats.
module load tacc-apptainer
module spider Rstats
module load intel/19.1.1 impi/19.0.9 Rstats
This should create a venv directory in your home. Move it into your repository
cp -r venv/ r-gdal-container/
Finally changethe directory into the workspace.
cd r-gdal-container
You'll then pull the container from Docker
apptainer pull wmobleytacc/r-gdal-container-tacc:0.2
Change any code you want in the 02_code/myscript.R . Put your data files in the 01_data and link it into the script.
apptainer run r-gdal-container-tacc_0.2.sif
The libraries should load but are 02_code/install_packages.R and the krigr functions are in 02_code/Kriging.R and misc.R