InformaticsMatters/squonk

Issues

• Wrong class names for chemcentral tables were present.

  #146 opened 3 years ago by tdudgeon
  0

• Chemcentral table definitions are duplicated

  #144 opened 4 years ago by tdudgeon
  1

• chemcentral-loader - java.lang.NoClassDefFoundError: javax/activation/DataSource

  #143 opened 4 years ago by alanbchristie
  0

• UntrustedGroovyDatasetStepSpec nobbled if TRAVIS or CI is set

  #73 opened 5 years ago by alanbchristie
  1

• SDF export fails for SMARTCyp results

  #138 opened 4 years ago by tdudgeon
  1

• JobExecutor ClassNotFoundException com.fasterxml.jackson.core.TSFBuilder

  #137 opened 4 years ago by alanbchristie
  0

• Notebook cells stuck 'Executing' (solved with Portal "bounce")

  #136 opened 4 years ago by alanbchristie
  0

• Provide ability to add affinity to pipeline pods

  #135 opened 4 years ago by alanbchristie
  0

• ChemAxon cells not working in Kubernetes deployment

  #134 opened 4 years ago by alanbchristie
  1

• Update the ChemAxon license file

  #133 opened 4 years ago by alanbchristie
  2

• CDK calculators returning zero

  #122 opened 4 years ago by tdudgeon
  0

• Provide a mechanism to place Nextflow pods on specific (k8s) nodes

  #132 opened 4 years ago by alanbchristie
  1

• OpenShift runner need dynamic PullPolicy

  #128 opened 4 years ago by alanbchristie
  1

• Upgrade RDKit containers

  #126 opened 4 years ago by tdudgeon
  2

• Groovy cell not working

  #130 opened 4 years ago by tdudgeon
  0

• Adjust travis build to use aws-trigger

  #127 opened 4 years ago by alanbchristie
  1

• Upgrade gradle from v3.5.1

  #123 opened 4 years ago by tdudgeon
  2

• Upgrade postgres driver from v9.4

  #125 opened 4 years ago by tdudgeon
  1

• Simple sort cell

  #120 opened 4 years ago by tdudgeon
  0

• Splitter cells

  #121 opened 4 years ago by tdudgeon
  2

• Upgrade Camel from v2.18.0

  #124 opened 4 years ago by tdudgeon
  1

• Allow to generate Kekule forms of molecules

  #119 opened 4 years ago by tdudgeon
  2

• Typo in publish.sh

  #113 opened 5 years ago by alanbchristie
  0

• The CI/CD process (in DEV-PROCESS.md) needs more detail

  #111 opened 5 years ago by alanbchristie
  0

• Implement new MPS services for Sygnature

  #106 opened 5 years ago by tdudgeon
  1

• busybox unit tests broken by latest pipelines behaviour

  #107 opened 5 years ago by alanbchristie
  1

• Flyway (database) - consider a new repository

  #105 opened 5 years ago by alanbchristie
  0

• Flyway - support migrations for non-squonk database ownership

  #104 opened 5 years ago by alanbchristie
  0

• Support registry pull secrets (Kubernetes)

  #102 opened 5 years ago by alanbchristie
  0

• Expose database and database user to environment

  #101 opened 5 years ago by alanbchristie
  1

• Nextflow execution in Docker broken

  #99 opened 5 years ago by tdudgeon
  2

• Flexible PROXY_ADDRESS_FORWARDING env variable (infra/keycloak)

  #100 opened 5 years ago by alanbchristie
  0

• Add support for authenticated services

  #98 opened 5 years ago by tdudgeon
  0

• Create cell for expanding molecule using fragnet search

  #97 opened 5 years ago by tdudgeon
  1

• Ansible infrastructure provisioning should offer DB wipe

  #95 opened 5 years ago by alanbchristie
  0

• ChemAxon chemservices fail to start on Minishift

  #94 opened 5 years ago by tdudgeon
  1

• Unable to parse secure environment variables (Travis)

  #92 opened 5 years ago by alanbchristie
  1

• Nobble failing tests for OSX

  #91 opened 5 years ago by alanbchristie
  0

• Adjust playbooks to support Travis-derived builds (latest & 0.3.0)

  #81 opened 5 years ago by alanbchristie
  1

• Use simpler build command

  #88 opened 5 years ago by alanbchristie
  1

• chemservices-basic image is not being pushed

  #86 opened 5 years ago by alanbchristie
  1

• Not pushing on tag

  #84 opened 5 years ago by alanbchristie
  1

• ChemAxon licence deposited in container image

  #82 opened 5 years ago by alanbchristie
  1

• Need a deployment solution for ChemAxon data

  #76 opened 5 years ago by alanbchristie
  2

• Preserve build files between stages/jobs? (Travis)

  #77 opened 5 years ago by alanbchristie
  0

• Allow unit tests to progress without ChemAxon files

  #72 opened 5 years ago by alanbchristie
  1

• DatasetNextflowExecutorStepSpec tests are broken

  #74 opened 5 years ago by alanbchristie
  0

• Add commit hash as a docker image label (latest)

  #70 opened 5 years ago by alanbchristie
  1

• Inconsistent role variable names (db create/delete)

  #68 opened 5 years ago by alanbchristie
  0

• Migrate to Gradle 5.5

  #67 opened 5 years ago by alanbchristie
  0