Ingalls Lab
The Microbial Metabolomics Research Center within the School of Oceanography at UW
University of Washington
Pinned Repositories
B-MIS-normalization
Best-matched internal standard normalization for metabolomics
FullPipeline
TBD pipeliine incorporating targeted and untargted analysis
getMetlinCode
Code used to query the Metlin database for mass and MSn data
Ingalls_Standards
A repository containing the Ingalls Lab standards list, available for download.
MARS_Project
Metabolite Annotation, Rank and Sort Project
MESOSCOPE_Repo
Unorganized repository of all analysis for the 2017 MESOSCOPE cruise
metabolomics2018
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
QualityControl
Quality control for Skyline-produced TQS and QE data
syn_project_2024
Syn Project by Claudia Luthy 2024.
Targeted_Pipeline
Targeted pipeline to quantify metabolomics datasets produced by QExactive and Triple Quadrupole Mass Specs.
Ingalls Lab's Repositories
IngallsLabUW/B-MIS-normalization
Best-matched internal standard normalization for metabolomics
IngallsLabUW/getMetlinCode
Code used to query the Metlin database for mass and MSn data
IngallsLabUW/QualityControl
Quality control for Skyline-produced TQS and QE data
IngallsLabUW/MARS_Project
Metabolite Annotation, Rank and Sort Project
IngallsLabUW/Targeted_Pipeline
Targeted pipeline to quantify metabolomics datasets produced by QExactive and Triple Quadrupole Mass Specs.
IngallsLabUW/FullPipeline
TBD pipeliine incorporating targeted and untargted analysis
IngallsLabUW/Ingalls_Standards
A repository containing the Ingalls Lab standards list, available for download.
IngallsLabUW/MESOSCOPE_Repo
Unorganized repository of all analysis for the 2017 MESOSCOPE cruise
IngallsLabUW/metabolomics2018
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
IngallsLabUW/QExactive_Quality_Control
Code for quality control check on output from the mass spectrometry program Skyline.
IngallsLabUW/R_Tutorial
IngallsLabUW/Restful_API_Tutorial
A short example of using a RESTful API to retrieve information from PubChem.
IngallsLabUW/Standards_Calculations
Automated process for calculating standard curves
IngallsLabUW/syn_project_2024
Syn Project by Claudia Luthy 2024.
IngallsLabUW/Upload_Examples
Mini collection of scripts for previous Ingalls Lab uploads to Metabolomics Workbench and CMAP.
IngallsLabUW/Data_Browser
A small R app designed to visualize various Ingalls Lab metabolomic experiments
IngallsLabUW/EddyCenter_CoAs
MESOSCOPE EddyCenter CoA data, Ingalls Lab
IngallsLabUW/Example_untargeted
Short example of various untargeted analysis: Includes scripts and paths to raw MZML data
IngallsLabUW/Fatty_Acids
Processing pipeline for fatty acids using predictive retention times.
IngallsLabUW/GBT_uptake_and_use
A repository for the code and analyses performed in Boysen et al. (in prep)
IngallsLabUW/ggbarribbon
A small repo that implements a new geom for ggplot2, geom_bar_ribbon
IngallsLabUW/phobos
A package of functions associated with the Ingalls Lab MARS project