/DiffusionGeometry

The code for "Diffusion Geometry" (2024).

Primary LanguageJupyter Notebook

DiffusionGeometry

This is the code for Diffusion Geometry (2024) https://arxiv.org/abs/2405.10858

  • The notebook Introduction_to_DG shows how to import and use some of the basic functions in diffusion geometry.

Core source code:

  • DiffusionGeometry contains all the main functions
  • DG_classes defines a class structure for computing DG, and is what you should usually import in practice

Demos and plots from the paper:

  • 2-forms
  • ABM
  • complexity_testing
  • manifold_testing
  • tumour_immune_cells

Utilities:

  • data_loader
  • DG_ml_stats
  • visualisation