OmicsVolcano V1.1

Update: October 2021
A new and improved version of OmicsVolcano V1.1

Updates:

tested on R version 4.1.1 (2021-08-10) "Kick Things"
fontawesome package has been added
rightSidebar() function is replaced with dashboardControlbar()
updated version v.2.0.0 of shinydashboardPlus() function. More info on shinydashboardPlus

Don't know where to start? Start at Help Page

General Usage Notes

Description: OmicsVolcano V1.1 is the R software for intuitive visualization and interactive exploration of high throughput biological data in a volcano plot. Unique feature of this software is the possibility to explore Mitochodrial Process(es) present in the data

Software workflow:
Note: Anyone with RStudio can use the OmicsVolcano software
   (Step 1) Checks presence of duplicated gene names in the input file. Provides a numeric extension 1,2,3.. to gene names that are duplicated
   (Step 2) Represents data as volcano plot, and enables interactive way of exploring plot
   (Step 3) Exports results as an image in selected format

Input Data Format

Note: Input file can be tab, comma or semicolon separated format saved as a text file. It should contain five columns with the same column names as shown below

ID	GeneSymbol	Description	Log2FC	AdjPValue
Q4U4S6	Xirp2	Xin actin-binding repeat-containing protein 2	6.64	1.33E-08
Q497D7	Rpl30	Rpl30 protein	2.14	0.8
Q9CPP6	Ndufa5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	-1.52	6.24E-08
P09055	Itgb1	Integrin beta-1	0.08	6.29E-08
...	...	...	...	...

Version Control

OmicsVolcano Version 1.1 R 4+ * *        R version 4.1.1 (2021-08-10) "Kick Things"
       "dplyr" v.1.0.7
       "shiny" v.1.7.1
       "shinydashboard" v.0.7.2
       "shinyWidgets" v.0.6.2
       "plotly" v.4.10.0
       "DT" v.0.19
       "ggplot2" v.3.3.5
       "svglite" v.2.0.0
       "stringr" v.1.4.0
       "crosstalk" v.1.1.1
       "config" v.0.3.1
       "shinydashboardPlus" v.2.0.3
       "shinythemes" v.1.2.0
       "shinyjs" v.2.0.0
       "fontawesome" v.0.2.2

Example Image

Copyright Notice

This project is licensed under the terms of the GNU version 3 general public license

Cite

Kuznetsova I, Lugmayr A, Rackham O, Filipovska A. OmicsVolcano: software for intuitive visualization and interactive exploration of high throughput biological data. 2020

Software Developers

Irina Kuznetsova | email: irina.kuznetsova@curtin.edu.au (not valid anymore email: irina.kuznetsova@perkins.org.au, May 2024)
Artur Lugmayr | email: lartur@acm.org

IrinaVKuznetsova/OmicsVolcano