Irzos

Irzos's Stars

• kenjihiranabe/The-Art-of-Linear-Algebra

  Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

  Language:PostScript17.8k147142.2k

• deepchem/deepchem

  Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

  Language:Python5.4k1431.7k1.7k

• danielegrattarola/spektral

  Graph Neural Networks with Keras and Tensorflow 2.

  Language:Python2.4k45275334

• NX-AI/xlstm

  Official repository of the xLSTM.

  Language:Python1.3k124492

• HIPS/neural-fingerprint

  Convolutional nets which can take molecular graphs of arbitrary size as input.

  Language:TeX4955810160

• muditbhargava66/PyxLSTM

  Efficient Python library for Extended LSTM with exponential gating, memory mixing, and matrix memory for superior sequence modeling.

  Language:Python24862621

• dhimmel/drugbank

  User-friendly extensions of the DrugBank database

  Language:HTML17711975

• kexinhuang12345/MolTrans

  MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

  Language:Jupyter Notebook17752142

• KrishnaswamyLab/ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers

  a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)

  Language:Jupyter Notebook825714

• ropensci/dbparser

  Source code for the R package, "dbparser" (i.e. DrugBank Parser)

  Language:R59514619

• lifanchen-simm/transformerCPI2.0

  Sequence-to-drug concept adds a perspective on drug design. It can serve as an alternative method to SBDD, particularly for proteins that do not yet have high-quality 3D structures available.

  Language:Python550011

• cthoyt/drugbank_downloader

  Don't worry about DrugBank licensing - write code that knows how to download it automatically

  Language:Python33318

• luoyunan/KDBNet

  Kinase–drug binding prediction with calibrated uncertainty quantification

  Language:Python21122

• styalai/xLSTM-pytorch

  A easy to use implementation of xLSTM

  Language:Python20311

• zhangpl109/DeepMGT-DTI

  Language:Python16124

• interstellar-Consultation-Services/dbdataset

  DrugBank dataset files in R dataframes

  Language:R123133

• changecool/Target-Prediction-Crawler

  This crawler can automatically crawl the target information of various molecular targets prediction websites, including SwissTargetPrediction, SEA, and SuperPred database. It achieves automatic screening and standardization of gene names.

  Language:Python83

• ltorres97/FS-GNNConv

  Few-Shot Learning via Graph Embeddings with Convolutional Networks for Low-Data Molecular Property Prediction

  Language:Python5200

• qiwang067/awesome-xlstm

  A curated list of xLSTM resources

  5100

• Ali01552/DrugBank-Scrap

  This Python script utilizes `asyncio` to scrape drug data from DrugBank and saves it to a CSV file.

  Language:Python2

• UYousafzai/llm_xlstm

  resources for training xlstm based llms, this repo may include: dataloaders, model architectures, training code.

  Language:Python20

• KoslickiLab/DrugBankNER

  ETL of DrugBank to recognize KG2 concepts in DrugBank entries for use as training data

  Language:Python110