IzabelShen
Helmholtz Institute for Functional Marine Biodiversity at the University of OldenburgOldenburg
Pinned Repositories
Abundance-occupancy
A repository for R code, data, figures, scripts from the manuscript "Abundance-occupancy relationships along taxonomic ranks reveal a consistency of niche differentiation in bacterioplankton with distinct lifestyles" (Submitted).
DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
EukRep_Pipeline
FreshSaltMicrobesCollide
Fresh-Salt Microbes Working Group
Impacts-of-micropollutants-on-freshwater-microbiome
METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
metagenomics-workshop
Metagenomics Workshop
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
PAPER_IzabelShen_AlgaPOM_2021
Workflows and R scripts for Izabel-Shen et al.
IzabelShen's Repositories
IzabelShen/Impacts-of-micropollutants-on-freshwater-microbiome
IzabelShen/PAPER_IzabelShen_AlgaPOM_2021
Workflows and R scripts for Izabel-Shen et al.
IzabelShen/Abundance-occupancy
A repository for R code, data, figures, scripts from the manuscript "Abundance-occupancy relationships along taxonomic ranks reveal a consistency of niche differentiation in bacterioplankton with distinct lifestyles" (Submitted).
IzabelShen/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
IzabelShen/EukRep_Pipeline
IzabelShen/FreshSaltMicrobesCollide
Fresh-Salt Microbes Working Group
IzabelShen/METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
IzabelShen/metagenomics-workshop
Metagenomics Workshop
IzabelShen/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
IzabelShen/minimalR-raw_data
Data to be used with minimalR
IzabelShen/ncbi_blast_tutorial
Short introduction to command line NCBI blast tools
IzabelShen/sickle
Windowed Adaptive Trimming for fastq files using quality
IzabelShen/sra-tools
SRA Tools