Pinned Repositories
J-81's Repositories
J-81/dataset_prep_nf
J-81/dp_tools
J-81/293_project_A_demo
J-81/ARC_Technical_Exercise
J-81/gl_dockerfiles
Dockerfiles created for my work at GeneLab
J-81/biopython
Official git repository for Biopython (originally converted from CVS)
J-81/che_chem_293
J-81/demo_OFFICIAL
J-81/dotfiles
Gitpod dotfiles repository
J-81/entropy-from-blast
J-81/example_containerization
J-81/GeneLab-Training
A repository for GeneLab Training documentation.
J-81/GeneLab_Data_Processing
J-81/GeneLab_Data_Processing-1
J-81/image_comp
J-81/isa-api
ISA tools API
J-81/masterProject
J-81/multi-package-containers
Testing building mulled containers for multi-requirement tools.
J-81/patch-GLDS-138-isa
J-81/practice_genomics_in_the_cloud
J-81/q2-mOTUs
J-81/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
J-81/schemastore
A collection of JSON schema files including full API
J-81/singularity-gitpod
Example workspace full with Singularity
J-81/spacemake
J-81/spatialtranscriptomics
Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell RNA-seq data, designed for 10x genomics visium and single cell transcriptomics.
J-81/test-datasets-extended
Test data to be used for automated testing with the pipelines
J-81/test_markdown
J-81/tmp_test_project_planning
J-81/webinarpipeline
Please don't break!!