Pinned Repositories
1806
18.06 course at MIT
3D-Caffe
adv-r
Advanced R programming: a book
adversarial
Code and hyperparameters for the paper "Generative Adversarial Networks"
arules
Mining Association Rules and Frequent Itemsets with R
bert
TensorFlow code and pre-trained models for BERT
Bio-image_Analysis_with_Python
biobert
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
matplotlib
matplotlib: plotting with Python
scikit-image
Image processing in Python
J1205's Repositories
J1205/Bio-image_Analysis_with_Python
J1205/matplotlib
matplotlib: plotting with Python
J1205/adversarial
Code and hyperparameters for the paper "Generative Adversarial Networks"
J1205/alphafold
Open source code for AlphaFold.
J1205/celfie
cfDNA cell type of origin estimation
J1205/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
J1205/cell2location_paper-Fig-2H-
Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics
J1205/CNCC-2019
Computational Neuroscience Crash Course (CNCC 2019)
J1205/cvxpy
A Python-embedded modeling language for convex optimization problems.
J1205/dataviz
A book covering the fundamentals of data visualization
J1205/dorothea
R package to access DoRothEA's regulons
J1205/liana
LIANA: a LIgand-receptor ANalysis frAmework
J1205/n5-viewer
BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.
J1205/nichenetr
NicheNet: predict active ligand-target links between interacting cells
J1205/ocean
R package for metabolic enzyme enrichment anaylsis
J1205/OmnipathR
R client for the OmniPath web service
J1205/PYTHON
J1205/scrattch
Single cell RNA-seq analysis for transcriptomic type characterization
J1205/scrattch.bigcat
iterative clustering pipeline of big single cell datasets.
J1205/scrattch.hicat
Hierarchical, iterative clustering for analysis of transcriptomics data in R
J1205/scRNA-seq
J1205/scvelo
RNA Velocity generalized through dynamical modeling
J1205/scvi-tools
Deep probabilistic analysis of single-cell omics data
J1205/SEARCHIN
Systematic Elucidation and Assessment of Regulatory Cell-to-cell Interaction Networks (SEARCHIN)
J1205/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
J1205/stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.
J1205/strelka
Strelka2 germline and somatic small variant caller
J1205/tidyseurat
Seurat meets tidyverse. The best of both worlds.
J1205/transcriptutorial
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
J1205/uwot
An R package implementing the UMAP dimensionality reduction method.