Pinned Repositories
AMYCNE
A copy number estimation toolkit
Assemblatron
De novo assembly variant validation tool
BlobFish
Differential expression analysis using DEseq2 and Salmon
FindSV
Structural variant pipeline
fluffy
FetaL AneUploidy and FetalFraction analYsis Pipeline
MegaFusion
Convert RNA fusion files to SV VCF
SMELT
a slurm wrapper for the melt tool
SplitVision
SplitVision -SV a software for extracting and analysing SV breakpoints
SVDB
structural variant database software
TIDDIT
TIDDIT - structural variant calling
J35P312's Repositories
J35P312/SVDB
structural variant database software
J35P312/TIDDIT
TIDDIT - structural variant calling
J35P312/fluffy
FetaL AneUploidy and FetalFraction analYsis Pipeline
J35P312/MegaFusion
Convert RNA fusion files to SV VCF
J35P312/AMYCNE
A copy number estimation toolkit
J35P312/AOC2017
Advent of code 2017
J35P312/BootstrapAnn
A tool for computing ASE P values based on ASEReadCounter output files
J35P312/Predict_FF
Predict fetal fraction from sequenced DNA extracted from maternal blood
J35P312/Processen
Pipeline for detection of non-reference processed pseudogenes
J35P312/AoC2019
J35P312/AoC2020
J35P312/AoC2021
J35P312/cg
Glue between Clinical Genomics apps
J35P312/ChiCaP
J35P312/CUDA_singularity
Cuda drivers
J35P312/ESS
Epigenetic signature software
J35P312/esypesy
Script for generating esy file from starlims input
J35P312/Fluffy_nextflow
A nextflow pipeline to run Fluffy
J35P312/HandyPenguin
Klinisk Genetik NIPT orderform tool
J35P312/handyPenguin2
The prequel!
J35P312/Kattis
J35P312/LUCKYMUCKY
MUC1 VNTR calculator
J35P312/merge_chicap_files
Scripts to merge chicap files
J35P312/MonteSV
monte carlo simulation of SV breakpoint distance and gene content
J35P312/poorpipe
poorly built nanopore pipeline
J35P312/preface_container
Preface singularity container
J35P312/RareDisease_RNA_workflow
J35P312/silverfish
Local de novo assembly project
J35P312/test_singularity
J35P312/txdb
Build frequency database of transcripts from gtf