JA-Lacey

Section Head Support - Bioinformatics MDU PHL

Melbourne University, MDU-PHL

Pinned Repositories

Jake_helper_scripts
collection of random scripts
00
nextflow
A DSL for data-driven computational pipelines
Language:Groovy00
PopPUNK
PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
Language:Python00
Project-Cooties
Teaching and Training Resources for Genomic Epidemiology and Pathogen Genomics using Fictitious Diseases
00
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
Language:Perl00
Roary
Rapid large-scale prokaryote pan genome analysis
Language:Perl00
Scoary
Pan-genome wide association studies
Language:Python00
shovill
Faster SPAdes assembly of Illumina reads
Language:Perl00
SKESA
SKESA assembler
Language:C++00
snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Language:Perl00

JA-Lacey's Repositories

JA-Lacey/Jake_helper_scripts
collection of random scripts
JA-Lacey/Project-Cooties
Teaching and Training Resources for Genomic Epidemiology and Pathogen Genomics using Fictitious Diseases
JA-Lacey/nextflow
A DSL for data-driven computational pipelines
Language:Groovy
JA-Lacey/shovill
Faster SPAdes assembly of Illumina reads
Language:Perl
JA-Lacey/PopPUNK
PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
Language:Python
JA-Lacey/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Language:Perl
JA-Lacey/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
Language:Perl
JA-Lacey/Roary
Rapid large-scale prokaryote pan genome analysis
Language:Perl
JA-Lacey/SKESA
SKESA assembler
Language:C++
JA-Lacey/Scoary
Pan-genome wide association studies
Language:Python