JAMoreno-Larios

JAMoreno-Larios's Stars

• elgw/deconwolf

  Deconvolution of widefield microscopy images and generation of point spread functions

  Language:C411

• nygctech/PICASSO

  Development of PICASSO plugin for napari

  Language:Jupyter Notebook133

• shaharsu/LUTbyWavelength

  A short imageJ script to set the LUT by wavelength for spectral imaging

  1

• CellProfiler/CellProfiler

  An open-source application for biological image analysis

  Language:Python904377

• cgohlke/tifffile

  Read and write TIFF files

  Language:Python531155

• NICALab/SUPPORT

  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.

  Language:Python6813

• siavashk/pycpd

  Pure Numpy Implementation of the Coherent Point Drift Algorithm

  Language:Python520116

• neka-nat/probreg

  Python package for point cloud registration using probabilistic model (Coherent Point Drift, GMMReg, SVR, GMMTree, FilterReg, Bayesian CPD)

  Language:Python851148

• jduffield65/coppafish

  Python version of iss software

  Language:Python66

• Time0o/focusfusion

  Fuse out of focus images into a single sharp one.

  Language:Python2

• biomicrodev/picasso

  Linear spectral unmixing

  Language:Jupyter Notebook21

• buzsakilab/buzcode

  Code for internal lab sharing - polishing has started but is by no means complete

  Language:MATLAB119128

• CellMigrationLab/Fast4DReg

  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.

  Language:Java373

• soledadgcogno/Ultraslow-oscillatory-sequences

  Codes corresponding to the paper 'Minute-scale oscillatory sequences in medial entorhinal cortex'

  Language:MATLAB32

• macronucleus/Chromagnon

  Image correction software for chromatic shifts in fluorescence microscopic images

  Language:Python215

• pymmcore-plus/pymmcore-widgets

  A set of Qt-based widgets onto the pymmcore-plus model

  Language:Python117

• ries-lab/Accent

  Language:Java21

• ShuJiaLab/MIRO

  Multiscale Image Restoration for fluorescence microscopy

  Language:MATLAB93

• sparkfun/SparkFun_ProDriver_TC78H670FTG_Arduino_Library

  Arduino Library for the Toshiba TC78H670FTG Bi-polar Stepper Motor Driver IC on the SparkFun ProDriver.

  Language:C++82

• PlotPyStack/PlotPy

  Curve and image plotting tools for Python/Qt applications

  Language:Python282

• BBNCELi/2pSAM_recon

  This repository demonstrates the whole reconstruction pipeline for two-photon synthetic aperture microscopy (2pSAM) with digital adaptive optics (DAO)

  Language:MATLAB3

• win0err/aphrodite-terminal-theme

  A minimalistic terminal theme (prompt) for sexy terminals that works in bash, fish and zsh

  Language:Shell14625

• djpohly/dwl

  dwm for Wayland - ARCHIVE: development has moved to Codeberg

  Language:C1.9k283

• ShuJiaLab/ACsN

  Automatic Correction for sCMOS-related Noise

  Language:MATLAB176

• JiLabUCBerkeley/JiLabAO

  Standalone control software for aberration measurement and correction

  Language:Rich Text Format2

• lambdaloop/pyolaf

  Python-based 3D reconstruction framework for light field microscopy

  Language:Python72

• MouseLand/suite2p

  cell detection in calcium imaging recordings

  Language:Jupyter Notebook349241

• spectralpython/spectral

  Python module for hyperspectral image processing

  Language:Python578139

• vazirilab/SID

  Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)

  Language:MATLAB277

• bbncWLG/LightField-deconvolution

  Language:MATLAB314