Encountered error in Hmmer
Lukanyo12 opened this issue · 2 comments
Hello Jeremy, I encountered this error during my analysis with TE-HMMER.
Fatal error: Exit code 134 ()
Translate nucleic acid sequences
Fatal exception ( source file p7_alidisplay .c , line 729):
backconverted subseq didnt end at expected length (scaffold255_4/PiRATEdb_Academ_HEL_NA)
/home/jeremy/galaxy/database/jobs_directory/001/1961/tool_script . sh : ligne 9 : 10158 Abandon (core dumped) hmm search -A result _hmmer . stock / home/jeremy/galaxy/tools/Pipeline/Hmmer/PiRATE_hmmer.hmm genome_prot. fa > /home/jeremy/galaxy/database/files/003/dataset_3875. dat
Dear Lukanyo,
Does TE-hmmer gave you an output or only this error?
Could you retry with half sequences as input?
Best
Jeremy
I think the problem is in my fasta file, because when I used another genome FASTA file, it worked perfecly. I will definately try with half sequences for this one. Thank you!