JBerthelier/PiRATE

Issues

• Slow download speed for PiRATE-VM file

  #58 opened 7 months ago by yweii
  0

• Progress with Docker version

  #43 opened 4 years ago by brettChapman
  4

• Are the Galaxy tools available on a Toolshed or others ?

  #24 opened 3 years ago by yvanlebras
  3

• PASTEC error

  #57 opened 4 years ago by adriludwig
  0

• TEannot Output

  #56 opened 4 years ago by KHANYAP4
  1

• error in PASTEC

  #53 opened 4 years ago by adriludwig
  8

• TEdenovo error with 60bp file

  #32 opened 5 years ago by pwkooij
  11

• MCL

  #55 opened 4 years ago by Lukanyo12
  2

• TEs classified as potential chimeric

  #54 opened 4 years ago by Lukanyo12
  4

• PiRATE pipeline.

  #38 opened 4 years ago by Lukanyo12
  4

• FTP is not available

  #23 opened 4 years ago by molecularwonder
  0

• Unable to upload data from my Local PC.

  #35 opened 4 years ago by majie5976
  2

• Run PiRATE without using Illumina raw data

  #45 opened 4 years ago by Lukanyo12
  1

• TE content (%)

  #50 opened 4 years ago by Lukanyo12
  3

• No internet connection

  #33 opened 4 years ago by JDepot
  5

• Does it necessary to have an assembled genome to run PiRATE pipeline

  #37 opened 4 years ago by majie5976
  2

• PiRATE DEFAULT DATABANKS

  #40 opened 4 years ago by Lukanyo12
  2

• Weight below or more than 1 GO

  #39 opened 4 years ago by Lukanyo12
  1

• Script for eliminating redudancy in CD-Hit est

  #47 opened 4 years ago by Lukanyo12
  1

• PASTEC Classification

  #52 opened 4 years ago by Lukanyo12
  1

• Statistics summary

  #49 opened 4 years ago by pwkooij
  3

• Single Transposable elements library

  #42 opened 4 years ago by Lukanyo12
  2

• RNA-seq data analysis

  #41 opened 4 years ago by Lukanyo12
  1

• How to upload huge data on the virtual computer to galaxy via FTP?

  #34 opened 4 years ago by liulu0827
  1

• How to interpret the output of PASTEC in PiRATE

  #22 opened 4 years ago by wangj2009
  1

• use docker to make it more robust?

  #19 opened 4 years ago by 444thLiao
  4

• TEannot - size genome

  #18 opened 4 years ago by adriludwig
  2

• transferring data to vm

  #17 opened 4 years ago by rob123king
  1

• Query regarding construction of libraries for annotation

  #10 opened 4 years ago by jphruska
  5

• HHH

  #51 opened 4 years ago by Lukanyo12
  1

• Encountered error in Hmmer

  #48 opened 4 years ago by Lukanyo12
  2

• TEannot query

  #46 opened 4 years ago by pwkooij
  3

• RepeatMasker encountered a line in an unrecognized format.

  #44 opened 4 years ago by vtrinca
  1

• Does it necessary to have an assembled genome to run PiRATE

  #36 opened 4 years ago by majie5976
  1

• Error with Helsearch

  #31 opened 5 years ago by pwkooij
  2

• FASTQ to FASTA error

  #27 opened 5 years ago by pwkooij
  2

• TEdenovo error

  #30 opened 5 years ago by pwkooij
  1

• How to connect via FTP on tne Virtual Machine to transfert my data

  #28 opened 5 years ago by JBerthelier
  1

• How to set up the number of processor and slots for the tools TEdenovo, PASTEC and TEannot (REPET package) in PiRATE

  #29 opened 5 years ago by JBerthelier
  0

• french keyboard in shell

  #16 opened 6 years ago by rob123king
  1

• how to freely copy/move file between PiRATE and Ubutu?

  #14 opened 5 years ago by wangj2009
  1

• Usage without VM

  #13 opened 6 years ago by timeu
  1

• Problem with TEannot

  #11 opened 5 years ago by ayala-usma
  3

• Install PiRATE

  #21 opened 5 years ago by Kyungkim-lab
  1

• _mysql_exceptions.DatabaseError: ERROR: failed to connect to the MySQL database

  #25 opened 5 years ago by wangj2009
  1

• long read sequence data

  #26 opened 5 years ago by pwkooij
  1

• PiRATE-VM

  #20 opened 5 years ago by molecularwonder
  1

• resize virtual hard disk

  #15 opened 6 years ago by jazberna1
  2

• GFF output from TE annotation

  #12 opened 6 years ago by lyy005
  2

• root password for the VM

  #9 opened 6 years ago by juancresc
  1