Pinned Repositories
Cloud-Protocols
Hacks for working with images and other hacks on Eucalyptus and Amazon clouds
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
cloudman
clone of main hg cloudman repository https://bitbucket.org/galaxy/cloudman in order to add eucalyptus functionality
CloudVIGOR
Build Scripts for creating a CloudVIGOR distribution image(s)
galaxy-tools-vcr
The .xml files for the tools presented on the customized Galaxy interface of JCVI's Viral Cloud Resource (VCR). These should replace the default Galaxy .xml before bundling.
mi-deployment
Clone of Enis Afgan's mi-deployment (from bitbucket)
mi-deployment-dirty
some wild cloud explorations (still learning git so dunno want to mess the teams repo)
S3curl
Wrapper for curl for operations on S3 and Eucalyptus Walrus (adapted from http://aws.amazon.com/code/128 )
VICVB
Genome browsing with JBrowse for JCVI VIGOR output inside Galaxy
VIGOR
JCVI's viral annotation pipeline
JCVI-Cloud's Repositories
JCVI-Cloud/CloudVIGOR
Build Scripts for creating a CloudVIGOR distribution image(s)
JCVI-Cloud/Cloud-Protocols
Hacks for working with images and other hacks on Eucalyptus and Amazon clouds
JCVI-Cloud/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
JCVI-Cloud/cloudman
clone of main hg cloudman repository https://bitbucket.org/galaxy/cloudman in order to add eucalyptus functionality
JCVI-Cloud/galaxy-tools-vcr
The .xml files for the tools presented on the customized Galaxy interface of JCVI's Viral Cloud Resource (VCR). These should replace the default Galaxy .xml before bundling.
JCVI-Cloud/mi-deployment
Clone of Enis Afgan's mi-deployment (from bitbucket)
JCVI-Cloud/mi-deployment-dirty
some wild cloud explorations (still learning git so dunno want to mess the teams repo)
JCVI-Cloud/S3curl
Wrapper for curl for operations on S3 and Eucalyptus Walrus (adapted from http://aws.amazon.com/code/128 )
JCVI-Cloud/VICVB
Genome browsing with JBrowse for JCVI VIGOR output inside Galaxy
JCVI-Cloud/VIGOR
JCVI's viral annotation pipeline
JCVI-Cloud/biocloudcentral
Easily launch CloudMan and CloudBioLinux clusters with no manual configuration
JCVI-Cloud/galaxy-tools-prok
Modified Galaxy interface for the Prok pipelines
JCVI-Cloud/jbrowse
Modern JavaScript-based Genome Browser
JCVI-Cloud/METAREP
METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics
JCVI-Cloud/OSQA-Eucalyptus
GSC Cloud documentation site running on OSQA system on Eucalyptus cloud.
JCVI-Cloud/OSQA-Heroku
A repository that will get you running OSQA on Heroku quickly.
JCVI-Cloud/rsanka-repo
repository for testing my scripts
JCVI-Cloud/SISPA-related