Pinned Repositories
celligrate
Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data
DAFi-gating
FRmatch
Cell type matching in single-cell RNA-sequencing data using FR-Match
GGRaSP
LinearDisplay
LinearDisplay.pl is a program that generates publication quality linear maps of user-defined genetic features (e.g., ORFs, promoters, transcriptional terminators, restriction enzyme recognition sites, primer-binding sites, phage attachment sites, target site duplications, assembly/contig breaks and RNA structures). It can also depict circular clusters like those used in network diagrams.
NSForest
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
OMeta-Public
OMeta-Public
PanACEA
PanACEA is a suite of PERL scripts that allows for visualization of prokaryotic pan-chromosomes, including core and variable regions.
PanGenomePipeline
PanGenomePipeline
VIGOR4
VIGOR4
J. Craig Venter Institute's Repositories
JCVenterInstitute/NSForest
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
JCVenterInstitute/FRmatch
Cell type matching in single-cell RNA-sequencing data using FR-Match
JCVenterInstitute/VIGOR4
VIGOR4
JCVenterInstitute/PanGenomePipeline
PanGenomePipeline
JCVenterInstitute/OMeta-Public
OMeta-Public
JCVenterInstitute/GGRaSP
JCVenterInstitute/PanACEA
PanACEA is a suite of PERL scripts that allows for visualization of prokaryotic pan-chromosomes, including core and variable regions.
JCVenterInstitute/DAFi-gating
JCVenterInstitute/LinearDisplay
LinearDisplay.pl is a program that generates publication quality linear maps of user-defined genetic features (e.g., ORFs, promoters, transcriptional terminators, restriction enzyme recognition sites, primer-binding sites, phage attachment sites, target site duplications, assembly/contig breaks and RNA structures). It can also depict circular clusters like those used in network diagrams.
JCVenterInstitute/celligrate
Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data
JCVenterInstitute/VIGOR_DB
VIGOR_DB
JCVenterInstitute/Jillion
Jillion
JCVenterInstitute/GUID
GUID
JCVenterInstitute/LOCUST
LOCUST (LOcus CUstom Sequence Typer) is a custom sequence locus typer tool for classifying microbial genomes. It provides a fully automated opportunity to customize the classification of genome-wide nucleotide variant data most relevant to biological research.
JCVenterInstitute/Meta-CATS
Metadata-driven Comparative Analysis Tool for Sequences (meta-CATS): an Automated Process for Identifying Significant Sequence Variations that Correlate with Virus Attributes
JCVenterInstitute/pathseq2taxsummary
JCVenterInstitute/CAMRA
CAMRA is a DS-I Africa research hub focused on analyzing clinical and molecular data related to antimicrobial resistance (AMR) in bacterial infections in Nigeria and Rwanda with the aim of translating genomics of AMR to sensitive, rapid diagnostics, and effective therapeutics.
JCVenterInstitute/celligrate-data
JCVenterInstitute/Flowgate_GUI
JCVenterInstitute/HumanSubtractionDB1
A host subtraction database for virus discovery in human cell line sequencing data
JCVenterInstitute/MPress
MPress ( Microbiome power estimation with sampling and simulation)
JCVenterInstitute/CDC
CDC
JCVenterInstitute/HostSubtractionDB
JCVenterInstitute/HSPW-V3
JCVenterInstitute/Jillion-validation
Bean validation for jillion
JCVenterInstitute/METAREP
METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics
JCVenterInstitute/mgtaxa
A free software for taxonomic classification of metagenomic sequences with machine learning techniques
JCVenterInstitute/onelogin-php-sdk
JCVenterInstitute/SMURF
SMURF
JCVenterInstitute/veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes