JDBLab
This is the Github profile, for the Group leader of the Stem cell & Pancreatic Regeneration Lab at the Diabetes Research Institute, University of Miami.
@universityofmiamiMiami USA
Pinned Repositories
Interactive-3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D tSNE plots of Seurat analyzed scRNAseq data
awesome-readme
A curated list of awesome READMEs
BITFAM
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
Longitudinal-scRNAseq-of-human-pancreatic-slices
This repository contains coding scripts utilized for the analysis of Longitudinal scRNAseq of human pancreatic slices datasets
markdown-toc-generate
Table of contents (TOC) generator from a given Markdown page source.
Merging-multiple-Seurat-Objects
Hello there! Some code on how to merge >2 Seurat objects and maintain object identity :)
Pancreas_ductal_scRNAseq
The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche
Pancreatic-beta-cell-regeneration-by-THR-123
In situ pharmacological induction of pancreatic beta-cell regeneration by THR-123, a cyclic peptide with BMP-7-like activity
JDBLab's Repositories
JDBLab/Pancreas_ductal_scRNAseq
The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche
JDBLab/3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D tSNE plots of Seurat analyzed scRNAseq data
JDBLab/awesome-readme
A curated list of awesome READMEs
JDBLab/BITFAM
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
JDBLab/Longitudinal-scRNAseq-of-human-pancreatic-slices
This repository contains coding scripts utilized for the analysis of Longitudinal scRNAseq of human pancreatic slices datasets
JDBLab/markdown-toc-generate
Table of contents (TOC) generator from a given Markdown page source.
JDBLab/Merging-multiple-Seurat-Objects
Hello there! Some code on how to merge >2 Seurat objects and maintain object identity :)
JDBLab/Pancreatic-beta-cell-regeneration-by-THR-123
In situ pharmacological induction of pancreatic beta-cell regeneration by THR-123, a cyclic peptide with BMP-7-like activity