JDRomano2
Assistant Professor of Informatics @ UPenn | Translational bioinformatics, computational toxicology & systems pharmacology
University of PennsylvaniaPhiladelphia, NY
Pinned Repositories
Aliro
Aliro: AI-Driven Data Science
pmlb
PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.
tpot
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
ASAP2
Successor to ASAP (doi:10.1186/1471-2105-9-103). A phylogenomic solution for investigating the evolutionary history of a set of (potentially related) genes.
tpot
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
tpot-nn
TPOT with a simple multilayer perceptron classifier
venomkb
VenomKB - A centralized knowledge base for computational toxinology
comptox_ai
ComptoxAI - An artificial Intelligence toolkit for computational toxicology
JDRomano2's Repositories
JDRomano2/ASAP2
Successor to ASAP (doi:10.1186/1471-2105-9-103). A phylogenomic solution for investigating the evolutionary history of a set of (potentially related) genes.
JDRomano2/tpot
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
JDRomano2/tpot-nn
TPOT with a simple multilayer perceptron classifier
JDRomano2/venomkb
VenomKB - A centralized knowledge base for computational toxinology
JDRomano2/.emacs.d
Joe Romano's Emacs configuration
JDRomano2/bmin5250_week13
Demo Git repository for Week 13 in BMIN 5250
JDRomano2/cmap_ae
Collection of autoencoder models trained on Connectivity Map data
JDRomano2/cmapPy
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
JDRomano2/comptox_ai_data
Utilities and scripts for preprocessing data sources in ComptoxAI
JDRomano2/generalizability
Clinical trial generalizability project
JDRomano2/gexpro
A library and toolkit for common representation and analysis of gene expression profile data
JDRomano2/hibachi
Data simulation software that creates data sets with particular characteristics
JDRomano2/jdr.bio
Joe Romano's personal website
JDRomano2/JDRomano2
JDRomano2/jdromano2.github.io
Joe Romano's personal web page
JDRomano2/ncats-apis
JDRomano2/neo4j-movies-template
A Neo4j movies React application with backends in Python/Flask and Node/Express.
JDRomano2/prehnromanowedding
JDRomano2/psb-gnn
GNN applications in predictive toxicology - use-case study for Tox21 QSAR modeling
JDRomano2/psb_venom_taxonomy
Code and data used in PSB 2016 submission regarding venom taxonomies
JDRomano2/PyGraphETL
Terminal-based ETL toolkit for graph databases
JDRomano2/saraheprehndds.com
Professional online profile of Sarah E. Prehn, DDS
JDRomano2/smdb_search
Command line tool for querying SemMedDB (stored in local MySQL database)
JDRomano2/stk
STK - A semantic toolkit for ontologies
JDRomano2/strix
Library and command line tool for interacting with OWL2 ontologies, aimed at supporting AI applications of bioontologies.
JDRomano2/venomkb-admin
Administration dashboard for VenomKB's back-end database
JDRomano2/venomkb_code
Repository containing the code used to build the databases on VenomKB
JDRomano2/VenomKB_old
VenomKB
JDRomano2/venomseq
Python package to perform data analysis for the VenomSeq workflow
JDRomano2/yggdrasil
A high-performance toolkit for building and interacting with biomedical OWL ontologies