JGLAHE

vs-aligner

splitstree6

SplitsTree App

AMAS_JGLAHE

Calculate summary statistics and manipulate multiple sequence alignments; JGLAHE fork with additional commands

FASconCAT-G

FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.

Invert_Rocks

ACT Parks Rock Supplementation v Invertebrate Diversity

quartetsampling-RAxML-NG-tempfile-handling

Quartet Sampling method for phylogenetic branch support evaluation (modified temp file handling when used with RAxML-NG)

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

AMAS

Calculate summary statistics and manipulate multiple sequence alignments

FASconCAT-G

FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

JGLAHE/AMAS_JGLAHE

Calculate summary statistics and manipulate multiple sequence alignments; JGLAHE fork with additional commands

JGLAHE/FASconCAT-G

FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.

JGLAHE/Invert_Rocks

ACT Parks Rock Supplementation v Invertebrate Diversity

JGLAHE/quartetsampling-RAxML-NG-tempfile-handling

Quartet Sampling method for phylogenetic branch support evaluation (modified temp file handling when used with RAxML-NG)

JGLAHE/trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly