JLTrincado/CaSpER

CaSpER documentation is in this Rmd.

BAFExtract code is available here.

Tutorials

1. Yale meningioma Bulk RNA-Seq dataset
2. TCGA-GBM Bulk RNA-Seq dataset
3. TCGA-BRCA Bulk RNA-Seq dataset
4. GBM Single-cell RNA-Seq dataset

Each run generally takes about 5-20 minutes.