JMHumphreys

JMHumphreys's Stars

• posit-dev/positron

  Positron, a next-generation data science IDE

  Language:TypeScript2.4k212.6k70

• greta-dev/greta

  simple and scalable statistical modelling in R

  Language:C++5272646863

• stephaneguindon/phyml

  PhyML -- Phylogenetic estimation using (Maximum) Likelihood

  Language:C1752015861

• osfclient/osfclient

  A python library and command-line client for file storage on OSF

  Language:Python1241211653

• ropensci/NLMR

  📦 R package to simulate neutral landscape models 🏔

  Language:R65146617

• eigenfoo/stan-vim

  A Vim plugin for the Stan probabilistic programming language.

  Language:Vim Script50514

• nicholasjclark/physalia-forecasting-course

  Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}

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• mikemeredith/IPM_code

  R and JAGS code for the book 'Integrated Population Models'

  Language:R188

• DenisRustand/INLAjoint

  Joint modeling multivariate longitudinal and time-to-event outcomes with INLA

  Language:R160

• huffyhenry/Stanislaw

  Process very large Stan models efficiently

  Language:R12200

• CDCgov/cfa-epinow2-pipeline

  Language:R10561

• emvolz-phylodynamics/mlesky

  Language:R10782

• amanda-minter/abc_R

  Language:R911

• CDCgov/cfa-viral-lineage-model

  Language:Python90

• mikemeredith/IPMbook

  R package with functions and data for the book 'Integrated Population Modeling'

  Language:R9402

• CDCgov/measles-model-chicago-2024

  Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Illinois, 2024", MMWR (2024)

  Language:R81

• nfidd/nfidd

  Course on nowcasting and forecasting of infectious disease dynamcis

  Language:Stan821544

• kr-colab/disperseNN

  Estimating dispersal using deep neural networks

  Language:Python7524

• CDCgov/spatialwwinference

  The development on this has moved to https://github.com/CDCgov/ww-inference-model

  Language:R4

• dylanhmorris/grizzlyplot

  Language:Python40

• haziqj/INLAvaan

  An R package for Bayesian structural equation modeling using INLA

  Language:R4200

• nicfel/Recombination-Material

  Material for the recombination manuscript

  Language:Jupyter Notebook4210

• emmanuelle-dankwa/ASF_model

  3100

• kekecsz/Transparent_Psi_Project_scripts

  Transparent_Psi_Project_scripts

  Language:R3100

• laduplessis/beastio

  R package with functions for pre- and post-processing of BEAST and BEAST2 files.

  Language:R3220

• cmilando/spatialRtBayes

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• webblabb/usdos

  United States Disease Outbreak Simulation

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• DrJREllis/Inferring-transmission-routes-FMDV

  Code and data related to the paper 'Inferring transmission routes for foot-and-mouth disease virus within a cattle herd using approximate Bayesian computation'.

  Language:MATLAB1

• kchalkowski/ASF_optimal_radius

  ASF optimal radius

  Language:R1

• pwongnak/FMD_quarantine

  An R code depository for the article "The quantitative risk of foot-and-mouth disease virus introduction through cattle quarantine centers at Thailand-Myanmar border"

  Language:R10