Modules directory for custom nf-core modules that cannot be added to main nf-core
These modules are created using the nf-core tooling but were not specifically developed for nf-core/modules. This is either due to lack of time to meet all requirements, lack of suitable test data or the module violates nf-core rules (eg. use of pipes!).
The nf-core package is a requirement for development and importing these modules into your own workflow. As too is Nextflow Simply:
pip install nf-coreor set up a specific conda env:
conda create --name nf-core python=3.11 nf-core nextflow
conda activate nf-coreSee the official nf-core/tools repo for actual details
I will update this with specific details when I have them but for now refer to below:
This is inspired by the EBI-Metagenomics team.