Pinned Repositories
AMRocks
Scripts used for Atlantis Massif crustal and sediment microbial analysis
Anvio
Using Anvio on the Bigelow Server
AssemblyMetagenome
Q control and Assembly of metagenomic reads for Atlantis Massif seq
bin-checkm
bin via metabat + checkM: Bigelow Specific
Binning
Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85
BioData
All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
bioinformaticsclass_SAGseembly
Assemble a SAG for ENVS6492
blobology
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step
canu
A single molecule sequence assembler for genomes large and small.
charlie
JackieGOO's Repositories
JackieGOO/AMRocks
Scripts used for Atlantis Massif crustal and sediment microbial analysis
JackieGOO/Anvio
Using Anvio on the Bigelow Server
JackieGOO/AssemblyMetagenome
Q control and Assembly of metagenomic reads for Atlantis Massif seq
JackieGOO/bin-checkm
bin via metabat + checkM: Bigelow Specific
JackieGOO/Binning
Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85
JackieGOO/BioData
All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
JackieGOO/bioinformaticsclass_SAGseembly
Assemble a SAG for ENVS6492
JackieGOO/blobology
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step
JackieGOO/canu
A single molecule sequence assembler for genomes large and small.
JackieGOO/charlie
JackieGOO/cold_adaptation
JackieGOO/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
JackieGOO/datasharing
The Leek group guide to data sharing
JackieGOO/dna-profiling
DNA Analysis
JackieGOO/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
JackieGOO/mothur
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
JackieGOO/pavian
🌈 Interactive analysis of metagenomics data
JackieGOO/seaicespiral
Sea Ice Death Spiral animation
JackieGOO/SorryTim
JackieGOO/vsearch
Versatile open-source tool for metagenomics