Pinned Repositories
ARGquaculture
Worldwide metagenomic monitoring of aquaculture-related antibiotic resistance
BasicUtilR
Basic utility script for my general work in discovering bacteria and host-microbe interactions, using omics
BasicUtils
Basic utility script for my general work in discovering bacteria and host-microbe interactions, using omics
Capercaillie_Metagenomics
Metagenomic analysis of western capercaillies
Comparative_Mycoplasma
Genome-resolved metagenomics suggests a mutualistic 2 relationship between Mycoplasma and salmonid hosts
HF_Metabolomics
Analysis of HoloFood metabolomics dataset
MSMM_2024
Norwegian_wild_Salmon_2022
Here, we use state-of-the-art genome resolve metagenomics and comparative genomics to investigate the metagenome dynamics and hologenome of more than 70 adult foraging wild Atlantic salmon. We further compare the microbiotas from Atlantic salmon with gut bacteria of other fish species from Norway to elucidate environmental and host related dynamics.
OmicsExplorer
Bioinformatics workflow for genomics data generation and analysis
QuickFixR
A small shiny based R packages. The package is trying to help researchers working Omics-based data, which are not super happy about coding at all. Within this packages it is possible to get an overview of data.
JacobAgerbo's Repositories
JacobAgerbo/Comparative_Mycoplasma
Genome-resolved metagenomics suggests a mutualistic 2 relationship between Mycoplasma and salmonid hosts
JacobAgerbo/Norwegian_wild_Salmon_2022
Here, we use state-of-the-art genome resolve metagenomics and comparative genomics to investigate the metagenome dynamics and hologenome of more than 70 adult foraging wild Atlantic salmon. We further compare the microbiotas from Atlantic salmon with gut bacteria of other fish species from Norway to elucidate environmental and host related dynamics.
JacobAgerbo/Capercaillie_Metagenomics
Metagenomic analysis of western capercaillies
JacobAgerbo/HF_Metabolomics
Analysis of HoloFood metabolomics dataset
JacobAgerbo/QuickFixR
A small shiny based R packages. The package is trying to help researchers working Omics-based data, which are not super happy about coding at all. Within this packages it is possible to get an overview of data.
JacobAgerbo/ARGquaculture
Worldwide metagenomic monitoring of aquaculture-related antibiotic resistance
JacobAgerbo/BasicUtilR
Basic utility script for my general work in discovering bacteria and host-microbe interactions, using omics
JacobAgerbo/BasicUtils
Basic utility script for my general work in discovering bacteria and host-microbe interactions, using omics
JacobAgerbo/MSMM_2024
JacobAgerbo/OmicsExplorer
Bioinformatics workflow for genomics data generation and analysis
JacobAgerbo/blueMAGIC
blueMAGIC: Marine Analysis for metaGenomic Identification of bioactive microbial Compounds
JacobAgerbo/Data2Result
Scripts to make results from metabarcoding data
JacobAgerbo/Disease_Challenge_Rainbow_Trout
Analytical pipeline for "The combined implications of probiotics, pathogenic infections and host immunity highlight the importance of gut microbiomes in understanding disease resilience in rainbow trout (Oncorhynchus mykiss)"
JacobAgerbo/JAR.github.io
My Academic webpage
JacobAgerbo/Multi_Omic_Rainbow_Trout
Intestinal multi omics unravels a differentiated metabolic landscape and loss of important gut bacteria Mycoplasma salmoninae in rainbow trout (Oncorhynchus mykiss) using non marine pre- and probiotics
JacobAgerbo/Musca_Gut_MGs
The housefly (Musca domestica) is a fly of the suborder Cyclorrhapha. It possibly originated in the Middle East, and spread around the world as a commensal of humans. It is the most common fly species found in houses. Here we investigate the gut microbiome of the house fly and how it helps for niche adaptation and food utilisation.
JacobAgerbo/Photobacterium_n_phages
Comparative Analysis of salmonid-related Photobacterium and its relation to phages
JacobAgerbo/Rasmussen_et_al_2020a
Scripts for analysis of Rasmussen et al. 2020a, eDNA approach for arthropod and fungi monitoring in vineyards