JacobBumgarner
Bioinformatician. Passionate about digital image processing, DL/ML, bioinformatics, and research software development.
Bristol Myers Squibb
Pinned Repositories
AoC2021
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
grad-descent-visualizer
A small package used to visualize gradient descent of test functions.
learning-repo
My learning repository.
Lee94-Skeletonization-Animation
Code created to visualize the stages of skeletonization using the Lee et al. 1994 MAT skeletonization algorithm
personal-website
pyvista_clip_demo
Demonstration of clipping and scaling functions with PyVista and PyVistaQt
RosaGPT
RosaGPT is a working and learning assistant for bioinformatics and biostatistics topics.
VesselVio
An open-source application for the analysis and visualization of segmented vasculature datasets
JacobBumgarner's Repositories
JacobBumgarner/VesselVio
An open-source application for the analysis and visualization of segmented vasculature datasets
JacobBumgarner/learning-repo
My learning repository.
JacobBumgarner/grad-descent-visualizer
A small package used to visualize gradient descent of test functions.
JacobBumgarner/pyvista_clip_demo
Demonstration of clipping and scaling functions with PyVista and PyVistaQt
JacobBumgarner/Lee94-Skeletonization-Animation
Code created to visualize the stages of skeletonization using the Lee et al. 1994 MAT skeletonization algorithm
JacobBumgarner/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
JacobBumgarner/AoC2021
JacobBumgarner/old_site
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
JacobBumgarner/RosaGPT
RosaGPT is a working and learning assistant for bioinformatics and biostatistics topics.
JacobBumgarner/AoC2023
JacobBumgarner/Daily_Mini_Analysis
A short python script written to scrape iOS text messages for crossword solve times.
JacobBumgarner/personal-website
JacobBumgarner/jacobbumgarner
Hello, I'm Jacob.
JacobBumgarner/minimally
Minimally is a Jekyll theme for GitHub Pages
JacobBumgarner/Plotter-vs-Background
JacobBumgarner/pyvista
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
JacobBumgarner/r_education
My formal exploration of R to prepare for future work.