JacobHanimann
PhD Student in Spatial Biology & Digital Pathology at the Institute of Tissue Medicine and Pathology, University of Bern
University of Bern, ETH ZürichZurich
Pinned Repositories
IsoAligner
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
JacobHanimann
Config files for my GitHub profile.
KEGG_API
Retrieve data from KEGG: Kyoto Encyclopedia of Genes and Genomes
Mutation_Frequency_Cosmic
Mutation frequencies of COSMIC
pheno-ml
Self-supervised learning for studying temporal and morphological drug effects in cancer cell images + ConvAE trained on 1M image dataset for transfer learning applications
R_High_throughput_data_analysis_exercises
scDINO
Self-Supervised Vision Transformers for multiplexed imaging datasets
vit-pytorch
Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch
JacobHanimann's Repositories
JacobHanimann/scDINO
Self-Supervised Vision Transformers for multiplexed imaging datasets
JacobHanimann/IsoAligner
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
JacobHanimann/JacobHanimann
Config files for my GitHub profile.
JacobHanimann/vit-pytorch
Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch
JacobHanimann/KEGG_API
Retrieve data from KEGG: Kyoto Encyclopedia of Genes and Genomes
JacobHanimann/Mutation_Frequency_Cosmic
Mutation frequencies of COSMIC
JacobHanimann/pheno-ml
Self-supervised learning for studying temporal and morphological drug effects in cancer cell images + ConvAE trained on 1M image dataset for transfer learning applications
JacobHanimann/R_High_throughput_data_analysis_exercises