Pinned Repositories
ACA_Data
Codes and results for RNA-seq analysis of advanced colorectal adenoma data
seq2HLA
In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.
Jaeseung-SONG's Repositories
Jaeseung-SONG/ACA_Data
Codes and results for RNA-seq analysis of advanced colorectal adenoma data
Jaeseung-SONG/seq2HLA
In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.