James-Thorson/spatial_factor_analysis

Simulated_example.R "getParameterOrder" not available for .Call()

Closed this issue · 5 comments

GodinA commented

Hi Jim, just started playing with your package and ran the Simulated_example.R but I get an error when I try to run the MakeADFun object function:

Error in .Call("getParameterOrder", data, parameters, new.env(), PACKAGE = DLL) : "getParameterOrder" not available for .Call() for package "spatial_factor_analysis_v24"

Is there another TMB file that I need to compile/load first e.g., called_from_R.cpp?

James-Thorson commented

Aurelie,

Thanks for your interested in the package, and sorry for the inconvenience in running the example.

Unfortunately, I just ran the example file from the two windows machines to which I have easy access, and neither had a problem.

A few ideas:

  1. Have you confirmed that TMB is running correctly on your machine by running any of the examples distributed with the package?
  2. Have you tried any other machines to replicate the error? In particular I don't have access to an apple machine in case that's what you're running.

Ultimately it'd be nice to have some process for automatically testing packages across operating systems, Rtool versions, R package version etc. Of course I was hoping devtools took care of that.

cheers,
jim

GodinA commented

Ok thanks Jim,

Will look into this (yes I’m running it on OS X).
I’ll keep you posted!

Aurelie
On Jun 3, 2015, at 2:25 PM, Jim Thorson <notifications@github.commailto:notifications@github.com> wrote:

Aurelie,

Thanks for your interested in the package, and sorry for the inconvenience in running the example.

Unfortunately, I just ran the example file from the two windows machines to which I have easy access, and neither had a problem.

A few ideas:

  1. Have you confirmed that TMB is running correctly on your machine by running any of the examples distributed with the package?
  2. Have you tried any other machines to replicate the error? In particular I don't have access to an apple machine in case that's what you're running.

Ultimately it'd be nice to have some process for automatically testing packages across operating systems, Rtool versions, R package version etc. Of course I was hoping devtools took care of that.

cheers,
jim

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/1#issuecomment-108534033.

Aurelie Cosandey-Godin, PhD
Dalhousie University, Department of Biology
godina@dal.camailto:godina@dal.ca | m: +1 902 499-0984

GodinA commented

Works just fine! My little glitch was associated with TmbFile = paste0(system.file("executables", package="SpatialFA"),"/") - which was the wrong working directory...

James-Thorson commented

Is that because macs store the CPP file in a different location? It would
be good to figure out how to make the code work off-the-shelf for macs as
well as PCs.

jim

On Fri, Jun 12, 2015 at 11:22 AM, Aurelie Cosandey Godin <
notifications@github.com> wrote:

Closed #1
#1.

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Reply to this email directly or view it on GitHub
#1 (comment)
.

GodinA commented

Not sure... the path did bring me to '.../Library/R/3.1/library/SpatialFA/executables/ with a dir() including all .cpp, .o, .dll files but I kept getting the above error message when I used MakeADFun. I had to set my wd to where I locally cloned your github repo and .../inst/executables/.