Pinned Repositories
bioinformatics
My script dump. Useless to anyone but me.
complexity_in_pymol
TMSOC like function into 3D protein structures.
Firefox-mendeley
An unofficial firefox add-on for Mendeley on Firefox before they made an official one. Click the icon and the Mendeley import box will open.
Hard-drive-defib
A few lines of code that randomly write on a hard drive. In some cases of deep formatting errors this can kick start the hard drive. This should be a last resort measure for disk recovery and will result in complete loss of data of the drive.
jamesabaker.github.io
A personal blog project.
Manchester-PhD-Thesis
A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Chemistry
multipass_tmh_analysis
Converts a UniProt txt file into graphs describing various TM sequence properties
nni_supplementary_material
Supplementary scripts and files for the manuscript entitled 'Charged residues next to transmembrane regions revisited: “Positive-inside rule” is complemented by the “negative inside depletion/outside enrichment rule”'
pymolrc_custom
.pymolrc is a pymol config that generates high quality ray traced images.
TA-protein-seq
Filters a .dat uniprot text file into predicted tail anchors.
JamesABaker's Repositories
JamesABaker/Hard-drive-defib
A few lines of code that randomly write on a hard drive. In some cases of deep formatting errors this can kick start the hard drive. This should be a last resort measure for disk recovery and will result in complete loss of data of the drive.
JamesABaker/jamesabaker.github.io
A personal blog project.
JamesABaker/Manchester-PhD-Thesis
A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Chemistry
JamesABaker/TA-protein-seq
Filters a .dat uniprot text file into predicted tail anchors.
JamesABaker/bioinformatics
My script dump. Useless to anyone but me.
JamesABaker/complexity_in_pymol
TMSOC like function into 3D protein structures.
JamesABaker/Firefox-mendeley
An unofficial firefox add-on for Mendeley on Firefox before they made an official one. Click the icon and the Mendeley import box will open.
JamesABaker/multipass_tmh_analysis
Converts a UniProt txt file into graphs describing various TM sequence properties
JamesABaker/nni_supplementary_material
Supplementary scripts and files for the manuscript entitled 'Charged residues next to transmembrane regions revisited: “Positive-inside rule” is complemented by the “negative inside depletion/outside enrichment rule”'
JamesABaker/Protein_sequence_to_output_box
A super basic Coffeescript static framework to handle protein sequences as an input, and numbers as an ouput upon a button click.
JamesABaker/pymol_workshop
Documents and commands for the EMBL-EBI 2021 pymol predoc workshop
JamesABaker/pymolrc_custom
.pymolrc is a pymol config that generates high quality ray traced images.
JamesABaker/tribute
Support your values, your way.
JamesABaker/biopython
Official git repository for Biopython (originally converted from CVS)
JamesABaker/epicontacts
Handling, Visualisation and Analysis of Epidemiological Contacts
JamesABaker/epiflows
☣:airplane: Risk assessment of travel-related disease spread
JamesABaker/EpiReport
ECDC in collaboration with Epiconcept developed an R package to create epidemiological reports
JamesABaker/github-issue-templates
:symbols: A collection of GitHub issue and pull request templates
JamesABaker/govcookiecutter
A cookiecutter template for data science projects within His Majesty's Government and wider public sector.
JamesABaker/i2extras
Additional functionality for working with incidence2
JamesABaker/incidence
☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence
JamesABaker/R0
Source code for the R0, a R package to estimate reproduction numbers for epidemic outbreaks.
JamesABaker/UniProt_molecular_weight
Gets a molecular weight for a list of UniProt ids.