JanaSperschneider
Senior Research Scientist @ CSIRO. Bioinformatics, genomics, effector prediction, machine learning, Python.
Canberra, Australia
Pinned Repositories
ApoplastP
Prediction of effectors and plant proteins in the plant apoplast using machine learning
EffectorP-1.0
EffectorP: predicting fungal effector proteins from secretomes using machine learning
EffectorP-2.0
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
EffectorP-3.0
Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
FindTelomeres
A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
GenomeAssemblyTools
A collection of scripts I use in genome assembly
LOCALIZER
LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell
NuclearPhaser
Phasing of dikaryotic fungal genome assemblies
Publications_Code
This repository houses code used in publications
Python_Intro_ANU_RSB
JanaSperschneider's Repositories
JanaSperschneider/FindTelomeres
A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
JanaSperschneider/EffectorP-3.0
Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
JanaSperschneider/NuclearPhaser
Phasing of dikaryotic fungal genome assemblies
JanaSperschneider/EffectorP-2.0
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
JanaSperschneider/GenomeAssemblyTools
A collection of scripts I use in genome assembly
JanaSperschneider/Python_Intro_ANU_RSB
JanaSperschneider/LOCALIZER
LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell
JanaSperschneider/EffectorP-1.0
EffectorP: predicting fungal effector proteins from secretomes using machine learning
JanaSperschneider/ApoplastP
Prediction of effectors and plant proteins in the plant apoplast using machine learning
JanaSperschneider/Publications_Code
This repository houses code used in publications
JanaSperschneider/EffectorP-3.0-Data
Training and test data for EffectorP 3.0
JanaSperschneider/EffectorP_2.0_NegativeTrainingData
The negative training data used in EffectorP 2.0
JanaSperschneider/python-smell
Python by Smell material