Jappy0

PhD Candidate in School of Computer Science, Faculty of Engineering & Information Technology.

University of Technology SydneySydney

Pinned Repositories

AAva-20-21-P2
Second Project of our Advanced Algorithms course, on the Common Substrings of More Than Two Strings problem
Language:C1 0 00
Complex-Network
复杂网络研究资源整理和基础知识学习
Language:Jupyter Notebook2 0 00
Deduplication_ErrorCorrection
How error correction affects PCR deduplication: a survey based on UMI datasets of short reads
Language:Python1 1 00
deepdirect
Language:Python0 0 00
microbe-drug-disease
Predicting pairwise relationships between human microbes, drugs and diseases
Language:MATLAB2 1 01
miREC
An error correction tool for miRNA reads at single-base resolution
Language:HTML1 0 00
NBCLDA
A Novel Probability Model for LncRNA–Disease Association Prediction Based on the Naïve Bayesian Classifier
Language:MATLAB3 0 02
noise2read
Language:Python2 1 00
reads2graph
Edit-distance-based read graph construction from short reads
Language:C++10
strain_identify
repo for strain identification project
Language:Python1 0 00

Jappy0's Repositories

Jappy0/NBCLDA
A Novel Probability Model for LncRNA–Disease Association Prediction Based on the Naïve Bayesian Classifier
Language:MATLAB3 0 02
Jappy0/microbe-drug-disease
Predicting pairwise relationships between human microbes, drugs and diseases
Language:MATLAB2 1 01
Jappy0/noise2read
Language:Python2 1 00
Jappy0/AAva-20-21-P2
Second Project of our Advanced Algorithms course, on the Common Substrings of More Than Two Strings problem
Language:C1 0 00
Jappy0/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0 00
Jappy0/biotite
A comprehensive library for computational molecular biology
Language:Python1 0 00
Jappy0/ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
1 0 0
Jappy0/CoLoRd
A versatile compressor of third generation sequencing reads.
Language:C++1 0 0
Jappy0/Deduplication_ErrorCorrection
How error correction affects PCR deduplication: a survey based on UMI datasets of short reads
Language:Python1 1 00
Jappy0/deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
Language:Python1 0 0
Jappy0/DPKL
Code accompanying the UAI 2021 paper 'Deep Kernels with Probabilistic Embeddings for Small-Data Learning'
Language:Jupyter Notebook1 0 0
Jappy0/fastDNA
Language:C++1 0 0
Jappy0/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
1
Jappy0/Jappy
Jappy Ping
1 1 00
Jappy0/MathFeature
Feature Extraction Package for Biological Sequences
Language:Python1 0 0
Jappy0/miREC
An error correction tool for miRNA reads at single-base resolution
Language:HTML1 0 00
Jappy0/pbbam
PacBio BAM C++ library
Language:C++1 0 0
Jappy0/PublicTwinNeuralNetworkRegression
Language:Python1 0 0
Jappy0/reads2graph
Edit-distance-based read graph construction from short reads
Language:C++10
Jappy0/readSimulator
Simulating paired-end short sequencing reads from circular and linear genomes
Language:Python1 0 0
Jappy0/ReSeq-profiles
Profiles for the ReSeq simulator with detailed description of the used datasets
1
Jappy0/seqgendiff
Sequence Generation for Differential Expression Analysis and Beyond
Language:R1 0 0
Jappy0/setuptools
Official project repository for the Setuptools build system
Language:Python1 0 0
Jappy0/strain_identify
repo for strain identification project
Language:Python1 0 00
Jappy0/VariantWorks
Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
Language:Python1 0 0
Jappy0/XICRA
Small RNAseq pipeline for paired-end reads
Language:Python1 0 0
Jappy0/deepdirect
Language:Python0 0 00
Jappy0/Flnc
Language:Python0 0
Jappy0/Jappy0
Personal repository
Jappy0/resume
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