Pinned Repositories
cancer
FakeGenome
A simulation program
inferCNV
Inferring CNV from Single-Cell RNA-Seq
mclust
based on mclust 5.4.5 (https://cran.r-project.org/web/packages/mclust/index.html)
scExplorerShiny
scRNA-seq data explorer based on Shiny
scPip
A pipeline for scRNA-seq data analysis
scVI
Deep generative modeling for single-cell transcriptomics
sscClust
simpler single cell RNAseq data clustering
sscVis
simpler single cell RNAseq data Visualization
STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
Japrin's Repositories
Japrin/STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
Japrin/sscClust
simpler single cell RNAseq data clustering
Japrin/scPip
A pipeline for scRNA-seq data analysis
Japrin/sscVis
simpler single cell RNAseq data Visualization
Japrin/cancer
Japrin/scExplorerShiny
scRNA-seq data explorer based on Shiny
Japrin/inferCNV
Inferring CNV from Single-Cell RNA-Seq
Japrin/mclust
based on mclust 5.4.5 (https://cran.r-project.org/web/packages/mclust/index.html)
Japrin/scVI
Deep generative modeling for single-cell transcriptomics
Japrin/awesome
:sunglasses: Curated list of awesome lists
Japrin/bv
Data Viewer in Terminal for Bioinformatician
Japrin/cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
Japrin/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
Japrin/COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
Japrin/echarts4r
🐳 ECharts 4 for R
Japrin/garnett
Automated cell type classification
Japrin/harmony
Scalable integration of single cell RNAseq data for batch correction and meta analysis
Japrin/iSEE
R/shiny interface for interactive visualization of data in objects derived from the SummarizedExperiment class
Japrin/kobackupdec
Huawei backup decryptor
Japrin/monocle-release
Japrin/PanC.T
Japrin/r-appveyor
Tools for using R with AppVeyor (https://appveyor.com)
Japrin/scDVA
An R shiny based tool used for single cell RNA-seq data visualization and analysis.
Japrin/SCope
Fast visualization tool for large-scale and high dimensional single-cell data
Japrin/scPanoView
Japrin/scReClassify
Post hoc cell type classification of single-cell RNA-sequencing data.
Japrin/single_cell_portal
Japrin/sk
some usefull script
Japrin/ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA)
Japrin/TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer