Jaycob-jh/BIDS-Auto-Organization

BIDS-Auto-Organization

Automatical organization bash script for your MRI images into BIDS format, temporarily available for T1, dwi and restfmri single session modalities.

Raw DICOM file structure

• Dataset/
  
  • Dicom/
    
    • anat/
      
      • 001/
        
      • 002/
        
      • ...
    • dwi/
      
      • 001/
        
      • 002/
        
      • ...
        
    • rest/
      
      • 001/
        
      • 002/
        
      • ...
        

Dependencies

The bash script requires dcm2niix and jo to be installed in Ubuntu as follows:

apt-get install dcm2niix
apt-get install jo