JereKoskela
I'm a reader of statistics at the School of Mathematics, Statistics and Physics, Newcastle University. I work on inference from stochastic processes.
Newcastle UnuversityNewcastle, UK
Pinned Repositories
arginfer
inferring Ancestral Recombination Graph
Beta-Xi-Sim
A simulator for ancestries of multiple unlinked loci driven by Beta-Xi-coalescents with exponential population growth.
discsim
Efficient coalescent simulations in a spatial continuum
ds-tree
An implementation of the Durrett-Schweinsberg coalescent
msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
msprime-1.0-paper
Publication describing msprime 1.0
proton-beam-sde
Simulator for an SDE describing a the path of a proton in proton beam therapy
seedbank-infer
This repository holds the code used to conduct a simulation study of the identifiability of various seed bank models in population genetics. A preprint with details is forthcoming.
tree-zig-zag
Zig-zag and Metropolis-Hastings samplers for the Kingman coalescent under finite or infinite sites mutation, along with a hybrid sampler combining both zig-zag and Metropolis-Hastings dynamics.
ts-mcmc
A simple prototype for using tskit to store phylogenetic MCMC output.
JereKoskela's Repositories
JereKoskela/Beta-Xi-Sim
A simulator for ancestries of multiple unlinked loci driven by Beta-Xi-coalescents with exponential population growth.
JereKoskela/tree-zig-zag
Zig-zag and Metropolis-Hastings samplers for the Kingman coalescent under finite or infinite sites mutation, along with a hybrid sampler combining both zig-zag and Metropolis-Hastings dynamics.
JereKoskela/arginfer
inferring Ancestral Recombination Graph
JereKoskela/discsim
Efficient coalescent simulations in a spatial continuum
JereKoskela/ds-tree
An implementation of the Durrett-Schweinsberg coalescent
JereKoskela/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
JereKoskela/msprime-1.0-paper
Publication describing msprime 1.0
JereKoskela/proton-beam-sde
Simulator for an SDE describing a the path of a proton in proton beam therapy
JereKoskela/seedbank-infer
This repository holds the code used to conduct a simulation study of the identifiability of various seed bank models in population genetics. A preprint with details is forthcoming.
JereKoskela/ts-mcmc
A simple prototype for using tskit to store phylogenetic MCMC output.
JereKoskela/what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper