Pinned Repositories
assorted-ImageJ-scripts
This repo contains various ImageJ and ImageJ2 scripts for a variety of applications
image-analysis-with-fiji
Introductory image analysis course using Fiji
intermediate-image-analysis
Practical image analysis course using a range of leading open source software
platelet-segmentation
Analysis workflow for characterization of platelet spreading and morphology
receptor-trafficking-toolbox
Matlab toolbox to quantify receptor trafficking and colocalization
RSMLM
R package for analysis of single molecule localization microscopy (SMLM) data
RSMLM-tutorials
Binder ready tutorial and demos for RSMLM
JeremyPike's Repositories
JeremyPike/RSMLM
R package for analysis of single molecule localization microscopy (SMLM) data
JeremyPike/image-analysis-with-fiji
Introductory image analysis course using Fiji
JeremyPike/RSMLM-tutorials
Binder ready tutorial and demos for RSMLM
JeremyPike/receptor-trafficking-toolbox
Matlab toolbox to quantify receptor trafficking and colocalization
JeremyPike/assorted-ImageJ-scripts
This repo contains various ImageJ and ImageJ2 scripts for a variety of applications
JeremyPike/intermediate-image-analysis
Practical image analysis course using a range of leading open source software
JeremyPike/platelet-segmentation
Analysis workflow for characterization of platelet spreading and morphology
JeremyPike/assorted-matlab-scripts
This repository contains various Matlab scripts for a variety of applications.
JeremyPike/cell-classification
JeremyPike/ColocalizationStudio-modified
A simple extension of Thibault Lagache's plugin to enable script use
JeremyPike/CSBDeep
Image restoration for fluorescence microscopy
JeremyPike/expansion-analysis
Analysis scripts for Faulkner et al. (2021) - Imaging Nanoscale Nuclear Structures with Expansion Microscopy.
JeremyPike/first-imageJ-command
This is an test plugin for experimentation with ImageJ commands and ops.
JeremyPike/ilastik-batch-clustering
Fiji macro for batch ilastik processing
JeremyPike/image-processing
Image Processing with Python
JeremyPike/lls-preprocess
Preprocessing of LLS data
JeremyPike/nuclear-tissue-analysis
ROI based analysis of tissue sections
JeremyPike/plateletCalculations
Notebook for surface area calculations
JeremyPike/PPN2V
Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"
JeremyPike/satellite-analysis
Command implementing counting and spatial analysis of nuclei, centrosomes and satellite proteins
JeremyPike/SCS-cell-tracking
JeremyPike/simple-threshold
test plugin for Dais learnathon
JeremyPike/SPAIR_pytorch
pytorch implementation of Spatially Invariant Unsupervised Object Detection with VAE
JeremyPike/TutorialBigDataViewer
BDV and Caching tutorial for the DAIS Learnathon 2017
JeremyPike/Usiigaci
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning