JeremyWesthead

Pinned Repositories

clockwork
CRyPTIC data processing pipelines
Language:HTML0 0 00
dummy-pipeline
Dummy Nextflow pipeline to attempt to recreate a bug
Language:Nextflow0 1 00
micro-testing
Playing around with microservices for self education
Language:Python00
simple-tunnel
Simple SSH tunnel manager
Language:Python00
VCFMIX
In VCF files of reference mapped data, determine mixed positions. Adding a fix for a bug + packaging
Language:Python0 0 01
FN5
SNP matrix generation with caching to disk to allow fast reloading
Language:C++11
gnomonicus
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Language:Python4 6 170
grumpy
Re-implementation of gumpy in rust for speed
Language:Rust20
gumpy
Genetics with numpy
Language:Python4 5 31
s3fs-fuse
FUSE-based file system backed by Amazon S3
Language:C++8.6k 175 1.2k1k

JeremyWesthead's Repositories

JeremyWesthead/clockwork
CRyPTIC data processing pipelines
Language:HTML0 0 00
JeremyWesthead/dummy-pipeline
Dummy Nextflow pipeline to attempt to recreate a bug
Language:Nextflow0 1 00
JeremyWesthead/micro-testing
Playing around with microservices for self education
Language:Python00
JeremyWesthead/simple-tunnel
Simple SSH tunnel manager
Language:Python00
JeremyWesthead/VCFMIX
In VCF files of reference mapped data, determine mixed positions. Adding a fix for a bug + packaging
Language:Python0 0 01