Pinned Repositories
clockwork
CRyPTIC data processing pipelines
dummy-pipeline
Dummy Nextflow pipeline to attempt to recreate a bug
micro-testing
Playing around with microservices for self education
simple-tunnel
Simple SSH tunnel manager
VCFMIX
In VCF files of reference mapped data, determine mixed positions. Adding a fix for a bug + packaging
FN5
SNP matrix generation with caching to disk to allow fast reloading
gnomonicus
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
grumpy
Re-implementation of gumpy in rust for speed
gumpy
Genetics with numpy
s3fs-fuse
FUSE-based file system backed by Amazon S3
JeremyWesthead's Repositories
JeremyWesthead/clockwork
CRyPTIC data processing pipelines
JeremyWesthead/dummy-pipeline
Dummy Nextflow pipeline to attempt to recreate a bug
JeremyWesthead/micro-testing
Playing around with microservices for self education
JeremyWesthead/simple-tunnel
Simple SSH tunnel manager
JeremyWesthead/VCFMIX
In VCF files of reference mapped data, determine mixed positions. Adding a fix for a bug + packaging