Pinned Repositories
ATGC_survival_presentation_Feb.27.2020
basicGameInGadot
makes a basic game in godot following tutorial: https://www.youtube.com/watch?v=Mc13Z2gboEk
basicGodotGame
creates a simple game in godot enginer following this tutorial series https://www.youtube.com/watch?v=Mc13Z2gboEk
basicNeuralNetworkPackage
Implementing a basic neural network from scratch, by translating a tutorial from Javier Ideami on Medium. https://towardsdatascience.com/coding-a-2-layer-neural-network-from-scratch-in-python-4dd022d19fd2
casebase
cbnn
R package for case-base neural networks:
cbnnManuscript
Code required for simulations, casestudies, and paper that generates CBNN manuscript
HeartBeastArpgTutorialGodot
All the code needed to follow and develop the game by heartbeast following this tutorial series: https://www.youtube.com/watch?v=mAbG8Oi-SvQ
UseR--CaseBase-Presentation
R-code to generate slides for the R presentation
Jesse-Islam's Repositories
Jesse-Islam/basicGameInGadot
makes a basic game in godot following tutorial: https://www.youtube.com/watch?v=Mc13Z2gboEk
Jesse-Islam/HeartBeastArpgTutorialGodot
All the code needed to follow and develop the game by heartbeast following this tutorial series: https://www.youtube.com/watch?v=mAbG8Oi-SvQ
Jesse-Islam/UseR--CaseBase-Presentation
R-code to generate slides for the R presentation
Jesse-Islam/ATGC_survival_presentation_Feb.27.2020
Jesse-Islam/basicGodotGame
creates a simple game in godot enginer following this tutorial series https://www.youtube.com/watch?v=Mc13Z2gboEk
Jesse-Islam/basicNeuralNetworkPackage
Implementing a basic neural network from scratch, by translating a tutorial from Javier Ideami on Medium. https://towardsdatascience.com/coding-a-2-layer-neural-network-from-scratch-in-python-4dd022d19fd2
Jesse-Islam/casebase
Jesse-Islam/casebaseIPAscore
Jesse-Islam/caseBaseRegularization
Jesse-Islam/cbnn
R package for case-base neural networks:
Jesse-Islam/cbnnManuscript
Code required for simulations, casestudies, and paper that generates CBNN manuscript
Jesse-Islam/cbpaper
Source code for Casebase paper
Jesse-Islam/clustalSORT
Sorts the output of clustal given strings starting with xx- or x-
Jesse-Islam/genpipesExtension
I extended genpipes by creating a script to work with the output folder structure. We get a few transcript and gene expression counts which we can use for analysis. uses txImporter, featurecounts and stringtie's prepDE.py
Jesse-Islam/godotPlayGround
A bunch of small godot projects
Jesse-Islam/GTFMerge
merges two GTF reference genomes
Jesse-Islam/Jesse-Islam.github.io
Personal Website
Jesse-Islam/Ligated-Plasmid-Checker-for-Inserts
Made to take information from nanuq, and takes well positions, sequence name and the inserts
Jesse-Islam/neuralNetworkPlayground
A repository to try out all the new fancy techniques I come across.
Jesse-Islam/Rdatasets-bioconductor
A collection of datasets originally distributed in bioconductor packages
Jesse-Islam/riskRegression
R package for risk regression and prediction with censored data
Jesse-Islam/RNAseq-QC-tools-genpipes
a set of functions to streamline the analysis of RNAseq using deseq2. We base the code here off of the output of genpipes
Jesse-Islam/RnaseqQCGenpipes
set of tools to unify the output of genpipes, and extend its functionality to include quality control assessments
Jesse-Islam/RosalindCode
Jesse-Islam/rpkg
Sahir's R package creation tutorial
Jesse-Islam/SimulateSurvival
A bunch of code to simulate survival data
Jesse-Islam/statisticalRethinking
Examples I work through in the statistical rethinking textbook
Jesse-Islam/survivalMLPUsingcasebase-AI-Genomics
This repository was created for the WINTER 2020 AI-genomics course given by district 3. the purpose of this project is to create a novel approach to survival analysis using casebase sampling. Casebase sampling reformulates how survival analysis is done, making existing methods like logistic regression feasible in a survival setting.
Jesse-Islam/SurvivalScraper
scrapes taskview links
Jesse-Islam/tradingSims