/ChrAccR

Analyzing chromatin accessibility data in R

Primary LanguageR

ChrAccR

Build Status

  • Package name: ChrAccR
  • Title: Analyzing chromatin accessibility data in R
  • Description: Tools for analyzing chromatin accessibility data in R. Currently mainly supports ATAC-seq data analysis.
  • Author/Maintainer: Fabian Mueller (muellerf@stanford.edu)
  • Version: 0.9.6
  • Date: 2019-11-11

Installation

To install ChrAccR and its dependencies, use the devtools installation routine:

# install devtools if not previously installed
if (!is.element('devtools', installed.packages()[,"Package"])) install.packages('devtools')

# install dependencies
devtools::install_github("demuellae/muLogR")
devtools::install_github("demuellae/muRtools")
devtools::install_github("demuellae/muReportR")

# install ChrAccR
devtools::install_github("GreenleafLab/ChrAccR")

Getting started

The ChrAccR vignette provides a most excellent starting point to get familiar with the package.