Jhsmit/ColiCoords

Issues

• Calculating Fluorescence Intensity at poles

  #126 opened 2 years ago by itaneja2
  1

• Image analysis

  #125 opened 3 years ago by Nico-F3
  10

• Radial distribution errors over occasional cells

  #122 opened 3 years ago by azagajewski
  0

• Coordinates _top and _bottom fail when cell becomes too vertical

  #119 opened 3 years ago by azagajewski
  2

• Not Able to Import mahotas

  #118 opened 3 years ago by nikhilrana015
  2

• Implement Cell Width Property

  #117 opened 5 years ago by guyazran
  1

• Segmentation using Inclusion Body containing E. coli (very bloated cells)

  #116 opened 5 years ago by SandorAlbert
  3

• add test for optional modules

  #68 opened 5 years ago by Jhsmit
  1

• matplotlib deprecationwarning

  #114 opened 5 years ago by Jhsmit
  0

• symfit deprecationwarning

  #113 opened 5 years ago by Jhsmit
  0

• Installation issue

  #112 opened 5 years ago by gittykhirbat
  7

• Joining CellLists

  #111 opened 5 years ago by Jhsmit
  0

• implement longitudinal and angular distribution kymographs

  #106 opened 5 years ago by Jhsmit
  0

• storm rendering with guassian normalization

  #105 opened 5 years ago by Jhsmit
  0

• https://colicoords.readthedocs.io/en/latest/storm_data.html#d-daostorm

  #103 opened 5 years ago by tBuLi
  1

• symfit API changes

  #101 opened 5 years ago by HazenBabcock
  1

• Implement radon transform

  #100 opened 5 years ago by Jhsmit
  0

• assertion error validation split

  #93 opened 6 years ago by Jhsmit
  0

• initialize cell with 64 bit binary image

  #82 opened 6 years ago by Jhsmit
  0

• multiple warnings when using gauss for storm distributions

  #71 opened 6 years ago by Jhsmit
  0

• Typecheck CellPlot / CellListPlot argument

  #76 opened 6 years ago by Jhsmit
  0

• negative intensity values in generated storm data

  #83 opened 6 years ago by Jhsmit
  0

• IterCellPlot plot storm when first element has no localizations

  #97 opened 6 years ago by Jhsmit
  0

• implement __str__ for colicoords.Coords

  #69 opened 6 years ago by Jhsmit
  0

• CellList optimize optionally skip over erros and report

  #75 opened 6 years ago by Jhsmit
  0

• KDE for plotting storm

  #99 opened 6 years ago by Jhsmit
  0

• aligning cells with storm data sets with zero localizations

  #98 opened 6 years ago by Jhsmit
  0

• wrong x units on histogramming storm data

  #78 opened 6 years ago by Jhsmit
  1

• measure_r error messages not helpful

  #95 opened 6 years ago by Jhsmit
  0

• parrallel hdf5 reading

  #94 opened 6 years ago by Jhsmit
  1

• MINPACK minimizer for cell fitting raises an error

  #66 opened 6 years ago by Jhsmit
  2

• 'limit_l' kwarg limits by xc coordinate not lc

  #96 opened 6 years ago by Jhsmit
  0

• method 'box' vs 'gauss' in CellImageFunction

  #86 opened 6 years ago by Jhsmit
  0

• STORM refactor to SMLM

  #88 opened 6 years ago by Jhsmit
  1

• hyperparameter optimization of differential evolution

  #67 opened 6 years ago by Jhsmit
  0

• STORM axial distribution plotting should give storm reconstruction result

  #90 opened 6 years ago by Jhsmit
  0

• bounds for Powell minimizing

  #84 opened 6 years ago by Jhsmit
  0

• Memory usage of optimize_mp increases over time

  #81 opened 6 years ago by Jhsmit
  2

• scipy 1.2.0 differential evolution result is much worse (and takes less time)

  #80 opened 6 years ago by Jhsmit
  0

• add 'limit_l' kwarg for hist_r_dist plotting option

  #79 opened 6 years ago by Jhsmit
  0

• classical spatial dist for storm data

  #77 opened 6 years ago by Jhsmit
  0

• importing from colicoords.plot override plotting defaults

  #87 opened 6 years ago by Jhsmit
  0

• super resolution reconstruction in multicolor

  #91 opened 6 years ago by Jhsmit
  0

• allow show datapoints for plotting of axial distribution graphs

  #89 opened 6 years ago by Jhsmit
  0

• Plotting needs major reworking

  #73 opened 6 years ago by Jhsmit
  1

• generalize crop_cell into indexing function

  #92 opened 6 years ago by Jhsmit
  0

• test custom minimize functions

  #85 opened 6 years ago by Jhsmit
  0

• docs autodoc module not building

  #70 opened 6 years ago by Jhsmit
  1

• Docs for chained minimization is wrong

  #74 opened 6 years ago by pckroon
  2

• norm_y on radial distribution should norm between zero and 1?

  #72 opened 6 years ago by Jhsmit
  0