HDX-MS-datasets
Repository for HDX-MS datasets
NOTE: This is not the HDX XML dataset format proposed at the HDX-MS 2022 conference, but a .yaml based format currently used in PyHDX. The aim is for thseet formats to converge.
The aim of this repository is to collect curated bottom-up HDX-MS datasets for automated processing, data mining and interactive visualization.
Datasets should consist of .csv D-uptake/exposure peptide tables. Each dataset is described by
a metadata.yaml file and a hdx_spec.yaml file.
Repository for downloading and loading datasets in python: hdxms-datasets
metadata.yaml
- Contains a list of authors (and contact email, ORCID, affiliations, ...)
- List of associated publications with the datasets
- List of repositories where raw data or associated data can be found
hdx_spec.yaml
- Describes the protein of interest
- Information on the protein state (mutations, ligands, oligomeric state, buffer conditions)
- HDX specific experimental conditions (deuteration percentage, pH, temperature)
- Specification of .csv file format
- Definition of peptide sets per protein state (FD control / ND control / experiment)