Python tools for ImageJ. Features: read/write ImageJ ROIs.
Reading ROI files:
from pymagej.roi import ROIDecoder
with ROIDecoder('roi_filepath.roi') as roi:
roi_obj = roi.get_roi()
The returned roi_obj is an ROIObject depending on the type of ROI. Currently only reading rectangle and freehand are supported.
Writing ROI files:
from pymagej.roi import ROIEncoder, ROIRect
roi_obj = ROIRect(20, 30, 40, 50) # Make ROIRect object specifing top, left, bottom, right
with ROIEncoder('roi_filepath.roi', roi_obj) as roi:
roi.write()
Read/write is supported for the following ROI types:
- Polygon
- Rectangle
- Oval
- Line
- Freeline
- Polyline
- Freehand
See also: https://github.com/hadim/read-roi