Jiadong001

AI4Bio_Paper_Reading_List

List of latest/classical papers about AI for Biology. Beginning in 2023. Present emphasis on Protein.

algorithm2022_teamwork

alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

Assessment-II

Predicting the binding of peptide and HLA Class I

ConTS-TOIS-2021

DiffDock-PP

Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)

ElliDock

Rigid protein-protein docking via equivariant elliptic-paraboloid interface prediction

Hi-TpH

pMTnet

Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Jiadong001/AI4Bio_Paper_Reading_List

List of latest/classical papers about AI for Biology. Beginning in 2023. Present emphasis on Protein.

Jiadong001/Hi-TpH

Jiadong001/algorithm2022_teamwork

Jiadong001/alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

Jiadong001/Assessment-II

Predicting the binding of peptide and HLA Class I

Jiadong001/ConTS-TOIS-2021

Jiadong001/ElliDock

Rigid protein-protein docking via equivariant elliptic-paraboloid interface prediction

Jiadong001/pMTnet

Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

Jiadong001/ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Jiadong001/TCRAI

Jiadong001/TCRdock

python tools for TCR:peptide-MHC modeling and analysis