Pinned Repositories
ATACProc
ATAC-seq processing pipeline
BAF-kinetics
Code used for the analyses of the paper Acute BAF perturbation causes immediate changes in chromatin accessibility
BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
exac_2015
Companion repo for ExAC paper, 2015
labs
Scripts for PH525x: Data Analysis for Genomics
lihang_book_algorithm
致力于将李航博士《统计学习方法》一书中所有算法实现一遍
PanCAF
SpatialScore
R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma".
TeachOpenCADD
TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Jie-Yin's Repositories
Jie-Yin/ATACProc
ATAC-seq processing pipeline
Jie-Yin/BAF-kinetics
Code used for the analyses of the paper Acute BAF perturbation causes immediate changes in chromatin accessibility
Jie-Yin/BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
Jie-Yin/exac_2015
Companion repo for ExAC paper, 2015
Jie-Yin/labs
Scripts for PH525x: Data Analysis for Genomics
Jie-Yin/lihang_book_algorithm
致力于将李航博士《统计学习方法》一书中所有算法实现一遍
Jie-Yin/PanCAF
Jie-Yin/SpatialScore
R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma".
Jie-Yin/TeachOpenCADD
TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data
Jie-Yin/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Jie-Yin/23andme_report
Generate a HTML report for 23andme data
Jie-Yin/admix
an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
Jie-Yin/atac-seq-pipeline
ENCODE ATAC-seq pipeline
Jie-Yin/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
Jie-Yin/Atlas_of_Human_Heart_Failure_Lavine
Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human Heart Failure"
Jie-Yin/CADD
Material for Computer-Aided Drug Design classes BSR3101
Jie-Yin/cyTOFcompensation
Companion repository for the paper 'Compensation of signal spillover in suspension and imaging mass cytometry'
Jie-Yin/gdc-client
GDC Data Transfer Tool
Jie-Yin/gnomad_lof
Jie-Yin/Heart_regeneration
Jie-Yin/ImcSegmentationPipeline
A pixelclassification based multiplexed image segmentation pipeline
Jie-Yin/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
Jie-Yin/Intro-to-ChIPseq
Intro to ChIPseq using HPC
Jie-Yin/Nvim-R
Vim plugin to work with R
Jie-Yin/RNAseq-training
Hands-On training 2015
Jie-Yin/SCPathology_publication
The Single-Cell Pathology Landscape of Breast Cancer
Jie-Yin/Structure-Based_docking
Scripts to do docking, single virtual screening, and etc.
Jie-Yin/tnbc_scrnaseq