CLIPper - CLIP peak enrichment recognition A tool to detect CLIP-seq peaks. Install: Until the next version of scipy comes out we are stuck using rc1. Get it here: http://sourceforge.net/projects/scipy/files/scipy/0.11.0rc1/ and install like a normal python package. Also multiprocessing is broken in python before version 2.7. Please make sure your python is up to date. Then easy_install clipper or python setup.py install Run clipper -h